Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0172

Experiment: MoYLS4 with Furfuryl Alcohol 0.5 %

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0171 and DvMF_0172 are separated by 113 nucleotidesDvMF_0172 and coaD overlap by 25 nucleotides DvMF_0171: DvMF_0171 - beta-lactamase domain protein (RefSeq), at 187,304 to 188,914 _0171 DvMF_0172: DvMF_0172 - methyltransferase (RefSeq), at 189,028 to 189,600 _0172 DvMF_0173: coaD - phosphopantetheine adenylyltransferase (RefSeq), at 189,576 to 190,337 coaD Position (kb) 189 190Strain fitness (log2 ratio) -3 -2 -1 0 1at 188.072 kb on + strand, within DvMF_0171at 188.074 kb on + strand, within DvMF_0171at 188.080 kb on - strand, within DvMF_0171at 188.460 kb on + strand, within DvMF_0171at 188.468 kb on - strand, within DvMF_0171at 188.564 kb on - strand, within DvMF_0171at 188.578 kb on + strand, within DvMF_0171at 188.597 kb on - strand, within DvMF_0171at 188.655 kb on + strand, within DvMF_0171at 188.679 kb on + strand, within DvMF_0171at 188.714 kb on + strand, within DvMF_0171at 189.163 kb on - strand, within DvMF_0172at 189.187 kb on - strand, within DvMF_0172at 189.297 kb on + strand, within DvMF_0172at 189.301 kb on - strand, within DvMF_0172at 190.332 kb on + strandat 190.465 kb on - strandat 190.480 kb on - strandat 190.480 kb on - strandat 190.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Furfuryl Alcohol 0.5 %
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188,072 + DvMF_0171 0.48 +0.9
188,074 + DvMF_0171 0.48 +1.2
188,080 - DvMF_0171 0.48 +0.4
188,460 + DvMF_0171 0.72 +0.2
188,468 - DvMF_0171 0.72 -0.3
188,564 - DvMF_0171 0.78 +0.0
188,578 + DvMF_0171 0.79 -2.0
188,597 - DvMF_0171 0.80 +0.4
188,655 + DvMF_0171 0.84 +0.1
188,679 + DvMF_0171 0.85 -0.0
188,714 + DvMF_0171 0.88 +1.5
189,163 - DvMF_0172 0.24 +0.3
189,187 - DvMF_0172 0.28 -2.8
189,297 + DvMF_0172 0.47 -2.2
189,301 - DvMF_0172 0.48 -2.0
190,332 + +0.7
190,465 - -0.9
190,480 - -0.5
190,480 - +0.9
190,553 - -0.3

Or see this region's nucleotide sequence