Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt b1396 and tRNA-Glu are separated by 143 nucleotides tRNA-Glu and DVU0602 are separated by 88 nucleotides DVU0602 and DVU0603 are separated by 228 nucleotides DVU0603 and DVU0604 overlap by 4 nucleotides DVU0604 and DVU0605 overlap by 18 nucleotides DVU0605 and DVU0606 are separated by 272 nucleotides
DVU0601: b1396 - phenylacetic acid degradation protein PaaI (TIGR), at 672,098 to 672,532
b1396
DVU_tRNA-Glu-1: tRNA-Glu - tRNA with anticodon TTC for Glu (VIMSS-AUTO), at 672,676 to 672,752
tRNA-Glu
DVU0602: DVU0602 - hypothetical protein (TIGR), at 672,841 to 673,203
DVU0602
DVU0603: DVU0603 - hypothetical protein (TIGR), at 673,432 to 673,698
DVU0603
DVU0604: DVU0604 - hypothetical protein (TIGR), at 673,695 to 673,826
DVU0604
DVU0605: DVU0605 - hypothetical protein (TIGR), at 673,809 to 673,937
DVU0605
DVU0606: DVU0606 - transcriptional regulator, ArsR family/methyltransferase, UbiE/COQ5 family (TIGR), at 674,210 to 675,133
DVU0606
Position (kb) 673
674 Strain fitness (log2 ratio) -1
0
1 at 672.435 kb on + strand, within b1396 at 672.522 kb on - strand at 672.760 kb on - strand at 673.491 kb on + strand, within DVU0603 at 673.509 kb on - strand, within DVU0603 at 673.613 kb on - strand, within DVU0603 at 673.994 kb on - strand at 674.025 kb on - strand at 674.042 kb on - strand at 674.121 kb on - strand at 674.291 kb on - strand at 674.407 kb on + strand, within DVU0606 at 674.437 kb on - strand, within DVU0606 at 674.454 kb on + strand, within DVU0606 at 674.497 kb on + strand, within DVU0606 at 674.532 kb on + strand, within DVU0606 at 674.579 kb on + strand, within DVU0606 at 674.602 kb on - strand, within DVU0606 at 674.622 kb on - strand, within DVU0606 at 674.644 kb on + strand, within DVU0606
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 672,435 + b1396 DVU0601 0.77 +0.4 672,522 - -1.0 672,760 - +1.5 673,491 + DVU0603 0.22 -1.4 673,509 - DVU0603 0.29 +0.3 673,613 - DVU0603 0.68 -0.5 673,994 - -0.2 674,025 - -0.5 674,042 - +0.5 674,121 - -0.8 674,291 - -0.6 674,407 + DVU0606 0.21 -1.1 674,437 - DVU0606 0.25 +1.0 674,454 + DVU0606 0.26 +0.8 674,497 + DVU0606 0.31 +0.8 674,532 + DVU0606 0.35 -0.1 674,579 + DVU0606 0.40 -0.9 674,602 - DVU0606 0.42 -0.1 674,622 - DVU0606 0.45 -1.4 674,644 + DVU0606 0.47 -0.6
Or see this region's nucleotide sequence