Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3021 and DVU3022 are separated by 61 nucleotides DVU3022 and atoC overlap by 4 nucleotides
DVU3021: DVU3021 - HDIG domain protein (TIGR), at 3,137,085 to 3,138,455
DVU3021
DVU3022: DVU3022 - sensory box histidine kinase/response regulator (TIGR), at 3,138,517 to 3,141,936
DVU3022
DVU3023: atoC - sigma-54 dependent DNA-binding response regulator (TIGR), at 3,141,933 to 3,143,357
atoC
Position (kb)
3138
3139
3140
3141
3142 Strain fitness (log2 ratio)
-1
0
1
2 at 3137.527 kb on - strand, within DVU3021 at 3137.550 kb on - strand, within DVU3021 at 3137.593 kb on + strand, within DVU3021 at 3137.632 kb on - strand, within DVU3021 at 3137.646 kb on + strand, within DVU3021 at 3137.654 kb on - strand, within DVU3021 at 3137.683 kb on + strand, within DVU3021 at 3137.720 kb on + strand, within DVU3021 at 3137.728 kb on - strand, within DVU3021 at 3137.768 kb on - strand, within DVU3021 at 3137.846 kb on + strand, within DVU3021 at 3137.862 kb on - strand, within DVU3021 at 3137.888 kb on - strand, within DVU3021 at 3138.103 kb on - strand, within DVU3021 at 3138.119 kb on - strand, within DVU3021 at 3138.119 kb on - strand, within DVU3021 at 3138.156 kb on - strand, within DVU3021 at 3138.161 kb on + strand, within DVU3021 at 3138.167 kb on + strand, within DVU3021 at 3138.169 kb on - strand, within DVU3021 at 3138.175 kb on - strand, within DVU3021 at 3138.175 kb on - strand, within DVU3021 at 3138.241 kb on - strand, within DVU3021 at 3138.272 kb on + strand, within DVU3021 at 3138.280 kb on - strand, within DVU3021 at 3138.402 kb on + strand at 3138.461 kb on + strand at 3140.668 kb on - strand, within DVU3022 at 3141.829 kb on + strand at 3141.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 3,137,527 - DVU3021 0.32 -0.7 3,137,550 - DVU3021 0.34 -1.1 3,137,593 + DVU3021 0.37 -1.0 3,137,632 - DVU3021 0.40 -0.8 3,137,646 + DVU3021 0.41 +0.4 3,137,654 - DVU3021 0.42 -0.1 3,137,683 + DVU3021 0.44 +0.3 3,137,720 + DVU3021 0.46 -0.4 3,137,728 - DVU3021 0.47 -1.4 3,137,768 - DVU3021 0.50 +0.7 3,137,846 + DVU3021 0.56 -0.5 3,137,862 - DVU3021 0.57 -0.8 3,137,888 - DVU3021 0.59 -0.4 3,138,103 - DVU3021 0.74 +0.9 3,138,119 - DVU3021 0.75 -0.5 3,138,119 - DVU3021 0.75 -0.4 3,138,156 - DVU3021 0.78 -0.4 3,138,161 + DVU3021 0.78 -0.3 3,138,167 + DVU3021 0.79 +0.4 3,138,169 - DVU3021 0.79 -0.7 3,138,175 - DVU3021 0.80 -1.6 3,138,175 - DVU3021 0.80 +0.5 3,138,241 - DVU3021 0.84 -1.1 3,138,272 + DVU3021 0.87 -0.1 3,138,280 - DVU3021 0.87 -1.4 3,138,402 + +0.0 3,138,461 + -1.0 3,140,668 - DVU3022 0.63 -1.4 3,141,829 + +2.4 3,141,918 - +1.1
Or see this region's nucleotide sequence