Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2810

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2808 and DVU2809 are separated by 210 nucleotidesDVU2809 and DVU2810 are separated by 14 nucleotidesDVU2810 and DVU2811 are separated by 73 nucleotidesDVU2811 and fdnG-3 are separated by 51 nucleotides DVU2808: DVU2808 - TonB domain protein (TIGR), at 2,911,653 to 2,912,162 DVU2808 DVU2809: DVU2809 - cytochrome c3 (TIGR), at 2,912,373 to 2,912,807 DVU2809 DVU2810: DVU2810 - formate dehydrogenase formation protein FdhE, putative (TIGR), at 2,912,822 to 2,913,769 DVU2810 DVU2811: DVU2811 - formate dehydrogenase, beta subunit, putative (TIGR), at 2,913,843 to 2,914,502 DVU2811 DVU2812: fdnG-3 - formate dehydrogenase, alpha subunit, selenocysteine-containing (TIGR), at 2,914,554 to 2,917,592 fdnG-3 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -2 -1 0 1 2at 2911.826 kb on - strand, within DVU2808at 2911.945 kb on + strand, within DVU2808at 2911.970 kb on + strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.093 kb on - strand, within DVU2808at 2912.183 kb on + strandat 2912.191 kb on - strandat 2912.242 kb on + strandat 2912.245 kb on - strandat 2912.267 kb on + strandat 2912.277 kb on + strandat 2912.298 kb on + strandat 2912.549 kb on + strand, within DVU2809at 2912.587 kb on + strand, within DVU2809at 2912.617 kb on + strand, within DVU2809at 2912.642 kb on - strand, within DVU2809at 2912.655 kb on + strand, within DVU2809at 2912.686 kb on - strand, within DVU2809at 2912.800 kb on - strandat 2912.810 kb on + strandat 2912.813 kb on - strandat 2912.852 kb on - strandat 2912.877 kb on + strandat 2912.902 kb on + strandat 2912.912 kb on + strandat 2912.917 kb on + strand, within DVU2810at 2912.925 kb on - strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.944 kb on + strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2912.982 kb on - strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.080 kb on + strand, within DVU2810at 2913.102 kb on + strand, within DVU2810at 2913.168 kb on - strand, within DVU2810at 2913.292 kb on + strand, within DVU2810at 2913.350 kb on + strand, within DVU2810at 2913.358 kb on - strand, within DVU2810at 2913.514 kb on - strand, within DVU2810at 2913.530 kb on - strand, within DVU2810at 2913.553 kb on - strand, within DVU2810at 2913.558 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.611 kb on + strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.619 kb on - strand, within DVU2810at 2913.633 kb on + strand, within DVU2810at 2913.643 kb on + strand, within DVU2810at 2913.659 kb on - strand, within DVU2810at 2913.685 kb on - strandat 2913.799 kb on - strandat 2913.909 kb on - strand, within DVU2811at 2914.130 kb on - strand, within DVU2811at 2914.147 kb on + strand, within DVU2811at 2914.155 kb on - strand, within DVU2811at 2914.294 kb on - strand, within DVU2811at 2914.365 kb on + strand, within DVU2811at 2914.552 kb on + strandat 2914.646 kb on + strandat 2914.695 kb on + strandat 2914.731 kb on - strandat 2914.736 kb on - strandat 2914.757 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,911,826 - DVU2808 0.34 -0.5
2,911,945 + DVU2808 0.57 -0.8
2,911,970 + DVU2808 0.62 +1.8
2,912,093 - DVU2808 0.86 +0.6
2,912,093 - DVU2808 0.86 -0.8
2,912,183 + -0.3
2,912,191 - +0.0
2,912,242 + -0.8
2,912,245 - -0.5
2,912,267 + -0.5
2,912,277 + -1.2
2,912,298 + -0.1
2,912,549 + DVU2809 0.40 -0.4
2,912,587 + DVU2809 0.49 -0.2
2,912,617 + DVU2809 0.56 +0.1
2,912,642 - DVU2809 0.62 +2.5
2,912,655 + DVU2809 0.65 -1.0
2,912,686 - DVU2809 0.72 -1.1
2,912,800 - -0.7
2,912,810 + -0.8
2,912,813 - -0.3
2,912,852 - +0.0
2,912,877 + -0.4
2,912,902 + +0.9
2,912,912 + -0.4
2,912,917 + DVU2810 0.10 +0.2
2,912,925 - DVU2810 0.11 -0.4
2,912,944 + DVU2810 0.13 +0.7
2,912,944 + DVU2810 0.13 +0.3
2,912,982 - DVU2810 0.17 -1.7
2,912,982 - DVU2810 0.17 -1.9
2,913,080 + DVU2810 0.27 -0.5
2,913,080 + DVU2810 0.27 +0.8
2,913,102 + DVU2810 0.30 -0.4
2,913,168 - DVU2810 0.36 -2.1
2,913,292 + DVU2810 0.50 -0.5
2,913,350 + DVU2810 0.56 -0.1
2,913,358 - DVU2810 0.57 -0.1
2,913,514 - DVU2810 0.73 -0.2
2,913,530 - DVU2810 0.75 -1.1
2,913,553 - DVU2810 0.77 -2.7
2,913,558 + DVU2810 0.78 -0.1
2,913,611 + DVU2810 0.83 -1.0
2,913,611 + DVU2810 0.83 +0.6
2,913,619 - DVU2810 0.84 -0.3
2,913,619 - DVU2810 0.84 -1.5
2,913,619 - DVU2810 0.84 -0.7
2,913,633 + DVU2810 0.86 -1.3
2,913,643 + DVU2810 0.87 -0.8
2,913,659 - DVU2810 0.88 +0.8
2,913,685 - +0.3
2,913,799 - +0.0
2,913,909 - DVU2811 0.10 +0.1
2,914,130 - DVU2811 0.43 -0.9
2,914,147 + DVU2811 0.46 -0.4
2,914,155 - DVU2811 0.47 -1.0
2,914,294 - DVU2811 0.68 -0.9
2,914,365 + DVU2811 0.79 -1.0
2,914,552 + -0.2
2,914,646 + -1.4
2,914,695 + -0.1
2,914,731 - -0.2
2,914,736 - -0.1
2,914,757 - -0.3

Or see this region's nucleotide sequence