Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2331

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntE.coliMinDlike) and DVU2331 are separated by 302 nucleotidesDVU2331 and proC are separated by 330 nucleotides DVU2330: E.coliMinDlike) - MRP family protein (TIGR), at 2,425,849 to 2,426,730 E.coliMinDlike) DVU2331: DVU2331 - Smr family protein (TIGR), at 2,427,033 to 2,428,262 DVU2331 DVU2332: proC - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data), at 2,428,593 to 2,429,390 proC Position (kb) 2427 2428 2429Strain fitness (log2 ratio) -2 -1 0 1at 2426.050 kb on - strand, within E.coliMinDlike)at 2426.110 kb on - strand, within E.coliMinDlike)at 2426.362 kb on - strand, within E.coliMinDlike)at 2426.377 kb on + strand, within E.coliMinDlike)at 2426.392 kb on - strand, within E.coliMinDlike)at 2426.598 kb on - strand, within E.coliMinDlike)at 2426.724 kb on + strandat 2426.732 kb on - strandat 2426.846 kb on + strandat 2426.861 kb on - strandat 2426.910 kb on - strandat 2426.986 kb on - strandat 2426.986 kb on - strandat 2427.318 kb on + strand, within DVU2331at 2427.366 kb on + strand, within DVU2331at 2427.396 kb on - strand, within DVU2331at 2427.592 kb on - strand, within DVU2331at 2427.592 kb on - strand, within DVU2331at 2427.703 kb on - strand, within DVU2331at 2427.799 kb on + strand, within DVU2331at 2427.804 kb on + strand, within DVU2331at 2427.812 kb on - strand, within DVU2331at 2427.814 kb on + strand, within DVU2331at 2427.915 kb on + strand, within DVU2331at 2427.915 kb on + strand, within DVU2331at 2427.950 kb on - strand, within DVU2331at 2428.366 kb on - strandat 2428.467 kb on + strandat 2428.826 kb on - strand, within proCat 2428.842 kb on - strand, within proCat 2428.933 kb on + strand, within proCat 2429.115 kb on + strand, within proC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,426,050 - E.coliMinDlike) DVU2330 0.23 -1.2
2,426,110 - E.coliMinDlike) DVU2330 0.30 -0.2
2,426,362 - E.coliMinDlike) DVU2330 0.58 -0.9
2,426,377 + E.coliMinDlike) DVU2330 0.60 -0.6
2,426,392 - E.coliMinDlike) DVU2330 0.62 +0.0
2,426,598 - E.coliMinDlike) DVU2330 0.85 -0.5
2,426,724 + +0.3
2,426,732 - -1.2
2,426,846 + -1.5
2,426,861 - -0.4
2,426,910 - +1.2
2,426,986 - -1.0
2,426,986 - -0.6
2,427,318 + DVU2331 0.23 -0.7
2,427,366 + DVU2331 0.27 -1.5
2,427,396 - DVU2331 0.30 -0.4
2,427,592 - DVU2331 0.45 -2.5
2,427,592 - DVU2331 0.45 -0.4
2,427,703 - DVU2331 0.54 -0.5
2,427,799 + DVU2331 0.62 -0.4
2,427,804 + DVU2331 0.63 -0.3
2,427,812 - DVU2331 0.63 -2.0
2,427,814 + DVU2331 0.63 -0.5
2,427,915 + DVU2331 0.72 +0.9
2,427,915 + DVU2331 0.72 -0.7
2,427,950 - DVU2331 0.75 -0.0
2,428,366 - -0.7
2,428,467 + +0.9
2,428,826 - proC DVU2332 0.29 +1.3
2,428,842 - proC DVU2332 0.31 +0.2
2,428,933 + proC DVU2332 0.43 -0.2
2,429,115 + proC DVU2332 0.65 -2.1

Or see this region's nucleotide sequence