Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2009

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2006 and DVU2007 are separated by 110 nucleotidesDVU2007 and DVU2008 are separated by 223 nucleotidesDVU2008 and DVU2009 are separated by 2 nucleotidesDVU2009 and DVU2010 overlap by 20 nucleotidesDVU2010 and DVU2011 are separated by 20 nucleotides DVU2006: DVU2006 - hypothetical protein (TIGR), at 2,087,712 to 2,087,867 DVU2006 DVU2007: DVU2007 - nuclease, putative (TIGR), at 2,087,978 to 2,088,394 DVU2007 DVU2008: DVU2008 - hypothetical protein (TIGR), at 2,088,618 to 2,088,752 DVU2008 DVU2009: DVU2009 - conserved domain protein (TIGR), at 2,088,755 to 2,089,138 DVU2009 DVU2010: DVU2010 - ISD1, transposase OrfB (TIGR), at 2,089,119 to 2,089,943 DVU2010 DVU2011: DVU2011 - ISD1, transposase OrfA (TIGR), at 2,089,964 to 2,090,230 DVU2011 Position (kb) 2088 2089 2090Strain fitness (log2 ratio) -1 0 1 2at 2088.004 kb on - strandat 2088.072 kb on - strand, within DVU2007at 2088.076 kb on + strand, within DVU2007at 2088.098 kb on - strand, within DVU2007at 2088.202 kb on + strand, within DVU2007at 2088.989 kb on + strand, within DVU2009at 2089.056 kb on - strand, within DVU2009at 2089.125 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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2,088,004 - +0.0
2,088,072 - DVU2007 0.23 +1.1
2,088,076 + DVU2007 0.24 +0.4
2,088,098 - DVU2007 0.29 -0.5
2,088,202 + DVU2007 0.54 +0.1
2,088,989 + DVU2009 0.61 +2.7
2,089,056 - DVU2009 0.78 -1.6
2,089,125 - -0.1

Or see this region's nucleotide sequence