Experiment: MoYLS4 with Zinc Sulfate 1mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2006 and DVU2007 are separated by 110 nucleotides DVU2007 and DVU2008 are separated by 223 nucleotides DVU2008 and DVU2009 are separated by 2 nucleotides DVU2009 and DVU2010 overlap by 20 nucleotides DVU2010 and DVU2011 are separated by 20 nucleotides
DVU2006: DVU2006 - hypothetical protein (TIGR), at 2,087,712 to 2,087,867
DVU2006
DVU2007: DVU2007 - nuclease, putative (TIGR), at 2,087,978 to 2,088,394
DVU2007
DVU2008: DVU2008 - hypothetical protein (TIGR), at 2,088,618 to 2,088,752
DVU2008
DVU2009: DVU2009 - conserved domain protein (TIGR), at 2,088,755 to 2,089,138
DVU2009
DVU2010: DVU2010 - ISD1, transposase OrfB (TIGR), at 2,089,119 to 2,089,943
DVU2010
DVU2011: DVU2011 - ISD1, transposase OrfA (TIGR), at 2,089,964 to 2,090,230
DVU2011
Position (kb)
2088
2089
2090 Strain fitness (log2 ratio)
-1
0
1
2 at 2088.004 kb on - strand at 2088.072 kb on - strand, within DVU2007 at 2088.076 kb on + strand, within DVU2007 at 2088.098 kb on - strand, within DVU2007 at 2088.202 kb on + strand, within DVU2007 at 2088.989 kb on + strand, within DVU2009 at 2089.056 kb on - strand, within DVU2009 at 2089.125 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM remove 2,088,004 - +0.0 2,088,072 - DVU2007 0.23 +1.1 2,088,076 + DVU2007 0.24 +0.4 2,088,098 - DVU2007 0.29 -0.5 2,088,202 + DVU2007 0.54 +0.1 2,088,989 + DVU2009 0.61 +2.7 2,089,056 - DVU2009 0.78 -1.6 2,089,125 - -0.1
Or see this region's nucleotide sequence