Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1669

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsK and lolA are separated by 17 nucleotideslolA and rluB are separated by 179 nucleotidesrluB and DVU1670 overlap by 4 nucleotidesDVU1670 and msbA are separated by 111 nucleotides DVU1667: ftsK - FtsK/SpoIIIE family protein (TIGR), at 1,745,901 to 1,748,231 ftsK DVU1668: lolA - outer membrane lipoprotein carrier protein, putative (TIGR), at 1,748,249 to 1,748,926 lolA DVU1669: rluB - ribosomal large subunit pseudouridine synthase B (TIGR), at 1,749,106 to 1,749,984 rluB DVU1670: DVU1670 - conserved hypothetical protein (TIGR), at 1,749,981 to 1,750,619 DVU1670 DVU1671: msbA - ABC transporter, ATP-binding protein/permease protein (TIGR), at 1,750,731 to 1,752,536 msbA Position (kb) 1749 1750Strain fitness (log2 ratio) -1 0 1at 1749.104 kb on + strandat 1749.104 kb on + strandat 1749.104 kb on + strandat 1749.104 kb on + strandat 1749.112 kb on - strandat 1749.228 kb on + strand, within rluBat 1749.326 kb on + strand, within rluBat 1749.368 kb on - strand, within rluBat 1749.468 kb on - strand, within rluBat 1749.536 kb on + strand, within rluBat 1749.947 kb on - strandat 1749.967 kb on - strandat 1750.197 kb on + strand, within DVU1670at 1750.271 kb on + strand, within DVU1670at 1750.419 kb on - strand, within DVU1670at 1750.571 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,749,104 + -0.2
1,749,104 + -0.1
1,749,104 + -0.3
1,749,104 + -0.4
1,749,112 - +0.6
1,749,228 + rluB DVU1669 0.14 -0.5
1,749,326 + rluB DVU1669 0.25 -1.2
1,749,368 - rluB DVU1669 0.30 +0.0
1,749,468 - rluB DVU1669 0.41 -1.7
1,749,536 + rluB DVU1669 0.49 +1.2
1,749,947 - -0.4
1,749,967 - +1.3
1,750,197 + DVU1670 0.34 -0.4
1,750,271 + DVU1670 0.45 -1.4
1,750,419 - DVU1670 0.69 -0.9
1,750,571 - -0.5

Or see this region's nucleotide sequence