Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1248

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1246 and DVU1247 are separated by 31 nucleotidesDVU1247 and argS are separated by 20 nucleotidesargS and fabD are separated by 230 nucleotides DVU1246: DVU1246 - membrane protein, putative (TIGR), at 1,332,313 to 1,333,116 DVU1246 DVU1247: DVU1247 - hypothetical protein (TIGR), at 1,333,148 to 1,333,969 DVU1247 DVU1248: argS - arginyl-tRNA synthetase (TIGR), at 1,333,990 to 1,335,645 argS DVU1249: fabD - malonyl CoA-acyl carrier protein transacylase (TIGR), at 1,335,876 to 1,336,829 fabD Position (kb) 1333 1334 1335 1336Strain fitness (log2 ratio) -1 0 1 2 3 4at 1333.080 kb on - strandat 1333.177 kb on - strandat 1333.184 kb on - strandat 1333.184 kb on - strandat 1333.241 kb on + strand, within DVU1247at 1333.243 kb on + strand, within DVU1247at 1333.282 kb on + strand, within DVU1247at 1333.476 kb on + strand, within DVU1247at 1333.494 kb on + strand, within DVU1247at 1333.781 kb on - strand, within DVU1247at 1333.803 kb on + strand, within DVU1247at 1333.859 kb on - strand, within DVU1247at 1333.924 kb on - strandat 1335.787 kb on - strandat 1335.829 kb on + strandat 1335.835 kb on + strandat 1335.837 kb on - strandat 1335.844 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,333,080 - -1.2
1,333,177 - +0.2
1,333,184 - -0.2
1,333,184 - -0.6
1,333,241 + DVU1247 0.11 -0.6
1,333,243 + DVU1247 0.12 +0.7
1,333,282 + DVU1247 0.16 +3.9
1,333,476 + DVU1247 0.40 -0.2
1,333,494 + DVU1247 0.42 +0.4
1,333,781 - DVU1247 0.77 +0.6
1,333,803 + DVU1247 0.80 +0.0
1,333,859 - DVU1247 0.86 +1.5
1,333,924 - +0.5
1,335,787 - -1.0
1,335,829 + +0.8
1,335,835 + -0.3
1,335,837 - -1.1
1,335,844 - +0.2

Or see this region's nucleotide sequence