Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0978

Experiment: MoYLS4 with Zinc Sulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0976 and DORF8571 are separated by 126 nucleotidesDORF8571 and DVU0978 are separated by 170 nucleotidesDVU0978 and b1200 are separated by 184 nucleotides DVU0976: DVU0976 - response regulator (TIGR), at 1,071,674 to 1,072,837 DVU0976 DORF8571: DORF8571 - SEED: FIG00603598: hypothetical protein, at 1,072,964 to 1,073,371 DORF8571 DVU0978: DVU0978 - ABC transporter, periplasmic substrate-binding protein, putative (TIGR), at 1,073,542 to 1,074,396 DVU0978 DVU0979: b1200 - DAK1 domain protein (TIGR), at 1,074,581 to 1,075,645 b1200 Position (kb) 1073 1074 1075Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1072.610 kb on + strand, within DVU0976at 1072.794 kb on + strandat 1072.812 kb on - strandat 1073.099 kb on + strand, within DORF8571at 1073.418 kb on - strandat 1073.430 kb on + strandat 1073.621 kb on - strandat 1073.669 kb on + strand, within DVU0978at 1073.686 kb on - strand, within DVU0978at 1073.689 kb on + strand, within DVU0978at 1073.726 kb on + strand, within DVU0978at 1073.726 kb on + strand, within DVU0978at 1073.731 kb on + strand, within DVU0978at 1073.734 kb on - strand, within DVU0978at 1073.747 kb on + strand, within DVU0978at 1073.844 kb on + strand, within DVU0978at 1074.005 kb on - strand, within DVU0978at 1074.046 kb on + strand, within DVU0978at 1074.052 kb on - strand, within DVU0978at 1074.063 kb on + strand, within DVU0978at 1074.082 kb on + strand, within DVU0978at 1074.192 kb on + strand, within DVU0978at 1074.192 kb on + strand, within DVU0978at 1074.192 kb on + strand, within DVU0978at 1074.240 kb on - strand, within DVU0978at 1074.355 kb on - strandat 1074.355 kb on - strandat 1074.461 kb on + strandat 1074.528 kb on + strandat 1074.533 kb on - strandat 1074.533 kb on - strandat 1074.533 kb on - strandat 1074.548 kb on + strandat 1074.590 kb on - strandat 1074.669 kb on - strandat 1074.736 kb on - strand, within b1200at 1074.798 kb on + strand, within b1200at 1074.822 kb on + strand, within b1200at 1074.885 kb on - strand, within b1200at 1074.937 kb on - strand, within b1200at 1074.942 kb on - strand, within b1200at 1074.956 kb on - strand, within b1200at 1075.011 kb on - strand, within b1200at 1075.011 kb on - strand, within b1200at 1075.090 kb on - strand, within b1200at 1075.090 kb on - strand, within b1200at 1075.095 kb on + strand, within b1200at 1075.113 kb on + strand, within b1200at 1075.245 kb on - strand, within b1200at 1075.285 kb on + strand, within b1200at 1075.321 kb on + strand, within b1200at 1075.329 kb on - strand, within b1200at 1075.370 kb on - strand, within b1200

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Zinc Sulfate 1mM
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1,072,610 + DVU0976 0.80 +1.3
1,072,794 + -0.3
1,072,812 - -1.7
1,073,099 + DORF8571 0.33 -2.1
1,073,418 - -0.0
1,073,430 + -0.7
1,073,621 - -0.3
1,073,669 + DVU0978 0.15 -1.1
1,073,686 - DVU0978 0.17 +1.0
1,073,689 + DVU0978 0.17 -0.9
1,073,726 + DVU0978 0.22 +1.2
1,073,726 + DVU0978 0.22 -0.8
1,073,731 + DVU0978 0.22 -0.8
1,073,734 - DVU0978 0.22 -1.6
1,073,747 + DVU0978 0.24 +2.1
1,073,844 + DVU0978 0.35 -0.4
1,074,005 - DVU0978 0.54 -0.8
1,074,046 + DVU0978 0.59 -1.0
1,074,052 - DVU0978 0.60 -2.8
1,074,063 + DVU0978 0.61 -0.3
1,074,082 + DVU0978 0.63 -0.8
1,074,192 + DVU0978 0.76 -0.6
1,074,192 + DVU0978 0.76 -0.9
1,074,192 + DVU0978 0.76 -2.9
1,074,240 - DVU0978 0.82 -0.3
1,074,355 - -0.3
1,074,355 - -0.1
1,074,461 + -1.1
1,074,528 + +0.2
1,074,533 - -0.6
1,074,533 - -0.6
1,074,533 - -1.1
1,074,548 + +2.3
1,074,590 - -1.3
1,074,669 - -1.2
1,074,736 - b1200 DVU0979 0.15 -0.9
1,074,798 + b1200 DVU0979 0.20 -0.4
1,074,822 + b1200 DVU0979 0.23 +0.4
1,074,885 - b1200 DVU0979 0.29 +0.1
1,074,937 - b1200 DVU0979 0.33 -0.1
1,074,942 - b1200 DVU0979 0.34 +1.1
1,074,956 - b1200 DVU0979 0.35 -0.2
1,075,011 - b1200 DVU0979 0.40 -0.1
1,075,011 - b1200 DVU0979 0.40 +0.4
1,075,090 - b1200 DVU0979 0.48 -0.3
1,075,090 - b1200 DVU0979 0.48 -0.5
1,075,095 + b1200 DVU0979 0.48 -1.0
1,075,113 + b1200 DVU0979 0.50 +0.6
1,075,245 - b1200 DVU0979 0.62 -0.7
1,075,285 + b1200 DVU0979 0.66 -0.7
1,075,321 + b1200 DVU0979 0.69 -1.4
1,075,329 - b1200 DVU0979 0.70 +0.2
1,075,370 - b1200 DVU0979 0.74 +1.1

Or see this region's nucleotide sequence