Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_921

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_919 and Ac3H11_920 are separated by 131 nucleotidesAc3H11_920 and Ac3H11_921 are separated by 128 nucleotidesAc3H11_921 and Ac3H11_922 are separated by 321 nucleotides Ac3H11_919 - Transcriptional regulator, LysR family, at 32,465 to 33,412 _919 Ac3H11_920 - FMN-dependent NADH-azoreductase, at 33,544 to 34,188 _920 Ac3H11_921 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 34,317 to 36,647 _921 Ac3H11_922 - Mobile element protein, at 36,969 to 37,949 _922 Position (kb) 34 35 36 37Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.387 kb on + strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.388 kb on - strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.412 kb on + strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.413 kb on - strandat 33.433 kb on + strandat 33.658 kb on + strand, within Ac3H11_920at 33.658 kb on + strand, within Ac3H11_920at 33.658 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.826 kb on + strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.827 kb on - strand, within Ac3H11_920at 33.898 kb on + strand, within Ac3H11_920at 33.898 kb on + strand, within Ac3H11_920at 33.899 kb on - strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.970 kb on + strand, within Ac3H11_920at 33.971 kb on - strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.015 kb on + strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.016 kb on - strand, within Ac3H11_920at 34.172 kb on + strandat 34.173 kb on - strandat 34.173 kb on - strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.186 kb on + strandat 34.187 kb on - strandat 34.187 kb on - strandat 34.187 kb on - strandat 34.319 kb on - strandat 34.477 kb on - strandat 34.702 kb on + strand, within Ac3H11_921at 34.702 kb on + strand, within Ac3H11_921at 34.702 kb on + strand, within Ac3H11_921at 34.702 kb on + strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 34.703 kb on - strand, within Ac3H11_921at 35.050 kb on + strand, within Ac3H11_921at 35.050 kb on + strand, within Ac3H11_921at 35.050 kb on + strand, within Ac3H11_921at 35.051 kb on - strand, within Ac3H11_921at 35.143 kb on + strand, within Ac3H11_921at 35.144 kb on - strand, within Ac3H11_921at 35.269 kb on + strand, within Ac3H11_921at 35.269 kb on + strand, within Ac3H11_921at 35.269 kb on + strand, within Ac3H11_921at 35.270 kb on - strand, within Ac3H11_921at 35.270 kb on - strand, within Ac3H11_921at 35.270 kb on - strand, within Ac3H11_921at 35.270 kb on - strand, within Ac3H11_921at 35.270 kb on - strand, within Ac3H11_921at 35.483 kb on - strand, within Ac3H11_921at 35.483 kb on - strand, within Ac3H11_921at 35.603 kb on - strand, within Ac3H11_921at 35.651 kb on - strand, within Ac3H11_921at 35.863 kb on + strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.864 kb on - strand, within Ac3H11_921at 35.894 kb on - strand, within Ac3H11_921at 36.139 kb on + strand, within Ac3H11_921at 36.139 kb on + strand, within Ac3H11_921at 36.140 kb on - strand, within Ac3H11_921at 36.140 kb on - strand, within Ac3H11_921at 36.140 kb on - strand, within Ac3H11_921at 36.152 kb on - strand, within Ac3H11_921at 36.206 kb on - strand, within Ac3H11_921at 36.206 kb on - strand, within Ac3H11_921at 36.206 kb on - strand, within Ac3H11_921at 36.269 kb on - strand, within Ac3H11_921at 36.738 kb on - strandat 36.738 kb on - strandat 36.765 kb on - strandat 36.774 kb on - strandat 36.784 kb on + strandat 36.797 kb on + strandat 36.901 kb on - strandat 36.901 kb on - strandat 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.108 kb on + strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.109 kb on - strand, within Ac3H11_922at 37.132 kb on + strand, within Ac3H11_922at 37.132 kb on + strand, within Ac3H11_922at 37.133 kb on - strand, within Ac3H11_922at 37.133 kb on - strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.159 kb on + strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.160 kb on - strand, within Ac3H11_922at 37.173 kb on + strand, within Ac3H11_922at 37.173 kb on + strand, within Ac3H11_922at 37.173 kb on + strand, within Ac3H11_922at 37.173 kb on + strand, within Ac3H11_922at 37.173 kb on + strand, within Ac3H11_922at 37.174 kb on - strand, within Ac3H11_922at 37.174 kb on - strand, within Ac3H11_922at 37.174 kb on - strand, within Ac3H11_922at 37.174 kb on - strand, within Ac3H11_922at 37.174 kb on - strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.372 kb on + strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.373 kb on - strand, within Ac3H11_922at 37.404 kb on + strand, within Ac3H11_922at 37.404 kb on + strand, within Ac3H11_922at 37.404 kb on + strand, within Ac3H11_922at 37.404 kb on + strand, within Ac3H11_922at 37.405 kb on - strand, within Ac3H11_922at 37.405 kb on - strand, within Ac3H11_922at 37.405 kb on - strand, within Ac3H11_922at 37.405 kb on - strand, within Ac3H11_922at 37.405 kb on - strand, within Ac3H11_922at 37.603 kb on + strand, within Ac3H11_922at 37.603 kb on + strand, within Ac3H11_922at 37.603 kb on + strand, within Ac3H11_922at 37.603 kb on + strand, within Ac3H11_922at 37.603 kb on + strand, within Ac3H11_922at 37.603 kb on + strand, within Ac3H11_922at 37.604 kb on - strand, within Ac3H11_922

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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33,387 + +0.9
33,387 + -1.9
33,387 + +0.7
33,387 + -0.6
33,387 + -2.9
33,387 + +2.4
33,387 + +0.3
33,388 - +0.3
33,388 - -0.5
33,388 - +1.1
33,388 - +2.4
33,412 + +0.7
33,412 + -1.3
33,412 + -0.8
33,412 + +0.6
33,413 - -0.7
33,413 - -0.6
33,413 - +0.7
33,413 - -0.3
33,433 + +0.8
33,658 + Ac3H11_920 0.18 -1.3
33,658 + Ac3H11_920 0.18 -1.1
33,658 + Ac3H11_920 0.18 +1.1
33,826 + Ac3H11_920 0.44 -1.9
33,826 + Ac3H11_920 0.44 +1.0
33,826 + Ac3H11_920 0.44 +0.7
33,826 + Ac3H11_920 0.44 +1.3
33,826 + Ac3H11_920 0.44 -0.2
33,827 - Ac3H11_920 0.44 +0.3
33,827 - Ac3H11_920 0.44 +1.0
33,827 - Ac3H11_920 0.44 +0.0
33,898 + Ac3H11_920 0.55 -1.3
33,898 + Ac3H11_920 0.55 -0.0
33,899 - Ac3H11_920 0.55 +0.7
33,970 + Ac3H11_920 0.66 +0.2
33,970 + Ac3H11_920 0.66 +0.3
33,970 + Ac3H11_920 0.66 +0.0
33,971 - Ac3H11_920 0.66 +0.2
34,015 + Ac3H11_920 0.73 -0.2
34,015 + Ac3H11_920 0.73 +1.3
34,015 + Ac3H11_920 0.73 +0.7
34,016 - Ac3H11_920 0.73 -1.2
34,016 - Ac3H11_920 0.73 -1.3
34,016 - Ac3H11_920 0.73 +1.0
34,016 - Ac3H11_920 0.73 -0.5
34,172 + +0.1
34,173 - +0.2
34,173 - +0.0
34,186 + +0.8
34,186 + +0.0
34,186 + -0.1
34,186 + -1.1
34,187 - +0.1
34,187 - -0.7
34,187 - -1.9
34,319 - -0.3
34,477 - +0.9
34,702 + Ac3H11_921 0.17 +0.5
34,702 + Ac3H11_921 0.17 -0.9
34,702 + Ac3H11_921 0.17 +0.5
34,702 + Ac3H11_921 0.17 -1.8
34,703 - Ac3H11_921 0.17 -0.6
34,703 - Ac3H11_921 0.17 +0.1
34,703 - Ac3H11_921 0.17 +0.9
34,703 - Ac3H11_921 0.17 -0.0
34,703 - Ac3H11_921 0.17 +2.1
34,703 - Ac3H11_921 0.17 +0.8
34,703 - Ac3H11_921 0.17 +0.2
35,050 + Ac3H11_921 0.31 +0.4
35,050 + Ac3H11_921 0.31 +0.7
35,050 + Ac3H11_921 0.31 -0.2
35,051 - Ac3H11_921 0.31 -0.4
35,143 + Ac3H11_921 0.35 +2.6
35,144 - Ac3H11_921 0.35 -0.4
35,269 + Ac3H11_921 0.41 +1.3
35,269 + Ac3H11_921 0.41 -0.6
35,269 + Ac3H11_921 0.41 -1.0
35,270 - Ac3H11_921 0.41 -0.2
35,270 - Ac3H11_921 0.41 +0.3
35,270 - Ac3H11_921 0.41 -0.1
35,270 - Ac3H11_921 0.41 -0.4
35,270 - Ac3H11_921 0.41 +0.4
35,483 - Ac3H11_921 0.50 +1.2
35,483 - Ac3H11_921 0.50 -1.4
35,603 - Ac3H11_921 0.55 +1.1
35,651 - Ac3H11_921 0.57 -0.8
35,863 + Ac3H11_921 0.66 +0.5
35,864 - Ac3H11_921 0.66 +0.3
35,864 - Ac3H11_921 0.66 +1.4
35,864 - Ac3H11_921 0.66 -0.9
35,864 - Ac3H11_921 0.66 -1.3
35,864 - Ac3H11_921 0.66 -1.3
35,864 - Ac3H11_921 0.66 -1.2
35,864 - Ac3H11_921 0.66 +0.2
35,864 - Ac3H11_921 0.66 -1.1
35,864 - Ac3H11_921 0.66 +1.1
35,864 - Ac3H11_921 0.66 -2.3
35,864 - Ac3H11_921 0.66 -0.5
35,864 - Ac3H11_921 0.66 -0.7
35,864 - Ac3H11_921 0.66 +0.7
35,894 - Ac3H11_921 0.68 +0.1
36,139 + Ac3H11_921 0.78 -1.9
36,139 + Ac3H11_921 0.78 +0.1
36,140 - Ac3H11_921 0.78 +0.2
36,140 - Ac3H11_921 0.78 +1.0
36,140 - Ac3H11_921 0.78 -1.4
36,152 - Ac3H11_921 0.79 -1.3
36,206 - Ac3H11_921 0.81 -0.1
36,206 - Ac3H11_921 0.81 +0.6
36,206 - Ac3H11_921 0.81 +1.7
36,269 - Ac3H11_921 0.84 -0.1
36,738 - +1.1
36,738 - +1.3
36,765 - -0.9
36,774 - -0.5
36,784 + -1.4
36,797 + -0.3
36,901 - +0.9
36,901 - -0.3
37,108 + Ac3H11_922 0.14 +0.5
37,108 + Ac3H11_922 0.14 +0.0
37,108 + Ac3H11_922 0.14 +1.4
37,108 + Ac3H11_922 0.14 -0.4
37,108 + Ac3H11_922 0.14 +0.9
37,108 + Ac3H11_922 0.14 +1.2
37,108 + Ac3H11_922 0.14 +0.2
37,108 + Ac3H11_922 0.14 +0.6
37,108 + Ac3H11_922 0.14 +0.6
37,108 + Ac3H11_922 0.14 +1.4
37,108 + Ac3H11_922 0.14 +0.1
37,108 + Ac3H11_922 0.14 -0.5
37,108 + Ac3H11_922 0.14 -1.0
37,109 - Ac3H11_922 0.14 -1.5
37,109 - Ac3H11_922 0.14 -1.3
37,109 - Ac3H11_922 0.14 -0.3
37,109 - Ac3H11_922 0.14 +0.7
37,109 - Ac3H11_922 0.14 -0.0
37,109 - Ac3H11_922 0.14 -0.6
37,109 - Ac3H11_922 0.14 +0.8
37,109 - Ac3H11_922 0.14 +0.2
37,109 - Ac3H11_922 0.14 -1.0
37,109 - Ac3H11_922 0.14 -0.2
37,132 + Ac3H11_922 0.17 -2.0
37,132 + Ac3H11_922 0.17 -0.9
37,133 - Ac3H11_922 0.17 -0.6
37,133 - Ac3H11_922 0.17 -1.4
37,159 + Ac3H11_922 0.19 -1.7
37,159 + Ac3H11_922 0.19 -0.1
37,159 + Ac3H11_922 0.19 -0.3
37,159 + Ac3H11_922 0.19 +0.8
37,159 + Ac3H11_922 0.19 +0.1
37,159 + Ac3H11_922 0.19 -0.2
37,159 + Ac3H11_922 0.19 -1.2
37,159 + Ac3H11_922 0.19 -0.3
37,159 + Ac3H11_922 0.19 -0.9
37,159 + Ac3H11_922 0.19 -0.4
37,159 + Ac3H11_922 0.19 -0.7
37,159 + Ac3H11_922 0.19 +0.5
37,159 + Ac3H11_922 0.19 -1.2
37,160 - Ac3H11_922 0.19 +1.0
37,160 - Ac3H11_922 0.19 +0.4
37,160 - Ac3H11_922 0.19 -0.6
37,160 - Ac3H11_922 0.19 +0.2
37,160 - Ac3H11_922 0.19 -0.4
37,160 - Ac3H11_922 0.19 -0.9
37,160 - Ac3H11_922 0.19 +0.0
37,160 - Ac3H11_922 0.19 -1.7
37,160 - Ac3H11_922 0.19 -2.3
37,160 - Ac3H11_922 0.19 +0.3
37,160 - Ac3H11_922 0.19 -1.0
37,160 - Ac3H11_922 0.19 -0.8
37,160 - Ac3H11_922 0.19 -1.2
37,160 - Ac3H11_922 0.19 -1.2
37,160 - Ac3H11_922 0.19 -0.8
37,173 + Ac3H11_922 0.21 -0.3
37,173 + Ac3H11_922 0.21 -0.8
37,173 + Ac3H11_922 0.21 +0.1
37,173 + Ac3H11_922 0.21 +1.1
37,173 + Ac3H11_922 0.21 -0.4
37,174 - Ac3H11_922 0.21 -0.2
37,174 - Ac3H11_922 0.21 +0.8
37,174 - Ac3H11_922 0.21 -1.7
37,174 - Ac3H11_922 0.21 -1.2
37,174 - Ac3H11_922 0.21 +0.2
37,372 + Ac3H11_922 0.41 +1.7
37,372 + Ac3H11_922 0.41 +0.6
37,372 + Ac3H11_922 0.41 -1.4
37,372 + Ac3H11_922 0.41 +0.4
37,372 + Ac3H11_922 0.41 -1.0
37,372 + Ac3H11_922 0.41 +1.1
37,372 + Ac3H11_922 0.41 -0.0
37,372 + Ac3H11_922 0.41 -0.2
37,372 + Ac3H11_922 0.41 -0.1
37,372 + Ac3H11_922 0.41 +0.1
37,372 + Ac3H11_922 0.41 -0.6
37,372 + Ac3H11_922 0.41 +0.8
37,373 - Ac3H11_922 0.41 -1.3
37,373 - Ac3H11_922 0.41 -0.4
37,373 - Ac3H11_922 0.41 +0.2
37,373 - Ac3H11_922 0.41 +0.8
37,373 - Ac3H11_922 0.41 -0.7
37,373 - Ac3H11_922 0.41 -0.6
37,373 - Ac3H11_922 0.41 -1.0
37,373 - Ac3H11_922 0.41 +0.1
37,373 - Ac3H11_922 0.41 -0.3
37,373 - Ac3H11_922 0.41 -0.6
37,373 - Ac3H11_922 0.41 +0.2
37,373 - Ac3H11_922 0.41 +0.1
37,404 + Ac3H11_922 0.44 +1.0
37,404 + Ac3H11_922 0.44 +2.5
37,404 + Ac3H11_922 0.44 -1.1
37,404 + Ac3H11_922 0.44 +1.3
37,405 - Ac3H11_922 0.44 -0.7
37,405 - Ac3H11_922 0.44 -0.7
37,405 - Ac3H11_922 0.44 -0.2
37,405 - Ac3H11_922 0.44 -0.1
37,405 - Ac3H11_922 0.44 +0.0
37,603 + Ac3H11_922 0.65 -0.6
37,603 + Ac3H11_922 0.65 -0.7
37,603 + Ac3H11_922 0.65 +0.0
37,603 + Ac3H11_922 0.65 +0.8
37,603 + Ac3H11_922 0.65 -0.9
37,603 + Ac3H11_922 0.65 +1.1
37,604 - Ac3H11_922 0.65 -0.4

Or see this region's nucleotide sequence