Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_884

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_883 and Ac3H11_884 are separated by 152 nucleotidesAc3H11_884 and Ac3H11_885 are separated by 22 nucleotidesAc3H11_885 and Ac3H11_886 are separated by 11 nucleotidesAc3H11_886 and Ac3H11_887 are separated by 125 nucleotides Ac3H11_883 - Cys regulon transcriptional activator CysB, at 166,949 to 167,851 _883 Ac3H11_884 - Export protein, at 168,004 to 168,984 _884 Ac3H11_885 - hypothetical protein, at 169,007 to 169,168 _885 Ac3H11_886 - hypothetical protein, at 169,180 to 169,728 _886 Ac3H11_887 - putative exported protein, at 169,854 to 170,822 _887 Position (kb) 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 167.025 kb on + strandat 167.026 kb on - strandat 167.026 kb on - strandat 167.026 kb on - strandat 167.618 kb on + strand, within Ac3H11_883at 167.818 kb on - strandat 167.832 kb on + strandat 167.832 kb on + strandat 167.832 kb on + strandat 167.832 kb on + strandat 167.833 kb on - strandat 167.904 kb on + strandat 167.904 kb on + strandat 167.905 kb on - strandat 167.905 kb on - strandat 167.911 kb on - strandat 167.911 kb on - strandat 167.942 kb on + strandat 167.943 kb on - strandat 167.943 kb on - strandat 167.943 kb on - strandat 168.014 kb on + strandat 168.014 kb on + strandat 168.015 kb on - strandat 168.015 kb on - strandat 168.187 kb on + strand, within Ac3H11_884at 168.187 kb on + strand, within Ac3H11_884at 168.187 kb on + strand, within Ac3H11_884at 168.188 kb on - strand, within Ac3H11_884at 168.188 kb on - strand, within Ac3H11_884at 168.188 kb on - strand, within Ac3H11_884at 168.250 kb on + strand, within Ac3H11_884at 168.251 kb on - strand, within Ac3H11_884at 168.251 kb on - strand, within Ac3H11_884at 168.417 kb on + strand, within Ac3H11_884at 168.417 kb on + strand, within Ac3H11_884at 168.418 kb on - strand, within Ac3H11_884at 168.436 kb on + strand, within Ac3H11_884at 168.436 kb on + strand, within Ac3H11_884at 168.436 kb on + strand, within Ac3H11_884at 168.436 kb on + strand, within Ac3H11_884at 168.436 kb on + strand, within Ac3H11_884at 168.436 kb on + strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.437 kb on - strand, within Ac3H11_884at 168.607 kb on + strand, within Ac3H11_884at 168.607 kb on + strand, within Ac3H11_884at 168.607 kb on + strand, within Ac3H11_884at 168.607 kb on + strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.608 kb on - strand, within Ac3H11_884at 168.757 kb on + strand, within Ac3H11_884at 168.757 kb on + strand, within Ac3H11_884at 168.758 kb on - strand, within Ac3H11_884at 168.758 kb on - strand, within Ac3H11_884at 168.802 kb on + strand, within Ac3H11_884at 168.803 kb on - strand, within Ac3H11_884at 168.803 kb on - strand, within Ac3H11_884at 169.444 kb on + strand, within Ac3H11_886at 169.444 kb on + strand, within Ac3H11_886at 169.444 kb on + strand, within Ac3H11_886at 169.444 kb on + strand, within Ac3H11_886at 169.445 kb on - strand, within Ac3H11_886at 169.445 kb on - strand, within Ac3H11_886at 169.445 kb on - strand, within Ac3H11_886at 169.445 kb on - strand, within Ac3H11_886at 169.447 kb on - strand, within Ac3H11_886at 169.447 kb on - strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.474 kb on + strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.475 kb on - strand, within Ac3H11_886at 169.489 kb on + strand, within Ac3H11_886at 169.489 kb on + strand, within Ac3H11_886at 169.658 kb on - strand, within Ac3H11_886at 169.866 kb on + strandat 169.866 kb on + strandat 169.880 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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167,025 + +0.8
167,026 - +3.3
167,026 - -2.1
167,026 - +0.5
167,618 + Ac3H11_883 0.74 +1.0
167,818 - +2.2
167,832 + +0.3
167,832 + -0.1
167,832 + +0.0
167,832 + +0.3
167,833 - -0.1
167,904 + +1.0
167,904 + -0.4
167,905 - +0.5
167,905 - -1.1
167,911 - +1.9
167,911 - -1.5
167,942 + +1.2
167,943 - -1.0
167,943 - -0.0
167,943 - -0.5
168,014 + -3.2
168,014 + -1.8
168,015 - -1.2
168,015 - -0.8
168,187 + Ac3H11_884 0.19 +1.6
168,187 + Ac3H11_884 0.19 +1.2
168,187 + Ac3H11_884 0.19 -2.0
168,188 - Ac3H11_884 0.19 -1.3
168,188 - Ac3H11_884 0.19 +1.0
168,188 - Ac3H11_884 0.19 -1.1
168,250 + Ac3H11_884 0.25 -0.4
168,251 - Ac3H11_884 0.25 -1.9
168,251 - Ac3H11_884 0.25 +0.4
168,417 + Ac3H11_884 0.42 +0.7
168,417 + Ac3H11_884 0.42 -0.5
168,418 - Ac3H11_884 0.42 -0.7
168,436 + Ac3H11_884 0.44 +0.1
168,436 + Ac3H11_884 0.44 +0.0
168,436 + Ac3H11_884 0.44 -1.5
168,436 + Ac3H11_884 0.44 -0.8
168,436 + Ac3H11_884 0.44 +2.2
168,436 + Ac3H11_884 0.44 -0.3
168,437 - Ac3H11_884 0.44 -0.4
168,437 - Ac3H11_884 0.44 +1.5
168,437 - Ac3H11_884 0.44 -0.3
168,437 - Ac3H11_884 0.44 -1.9
168,437 - Ac3H11_884 0.44 -2.3
168,437 - Ac3H11_884 0.44 +1.6
168,437 - Ac3H11_884 0.44 -0.7
168,607 + Ac3H11_884 0.61 -1.1
168,607 + Ac3H11_884 0.61 -0.2
168,607 + Ac3H11_884 0.61 -0.5
168,607 + Ac3H11_884 0.61 -0.6
168,608 - Ac3H11_884 0.62 -0.1
168,608 - Ac3H11_884 0.62 -0.5
168,608 - Ac3H11_884 0.62 +0.0
168,608 - Ac3H11_884 0.62 -0.6
168,608 - Ac3H11_884 0.62 +0.2
168,608 - Ac3H11_884 0.62 +0.7
168,608 - Ac3H11_884 0.62 -0.9
168,608 - Ac3H11_884 0.62 -1.0
168,608 - Ac3H11_884 0.62 +0.5
168,608 - Ac3H11_884 0.62 -0.0
168,757 + Ac3H11_884 0.77 -0.5
168,757 + Ac3H11_884 0.77 -1.5
168,758 - Ac3H11_884 0.77 -0.4
168,758 - Ac3H11_884 0.77 -0.5
168,802 + Ac3H11_884 0.81 -2.3
168,803 - Ac3H11_884 0.81 -0.2
168,803 - Ac3H11_884 0.81 +0.8
169,444 + Ac3H11_886 0.48 +0.7
169,444 + Ac3H11_886 0.48 -0.1
169,444 + Ac3H11_886 0.48 -1.8
169,444 + Ac3H11_886 0.48 -1.0
169,445 - Ac3H11_886 0.48 +0.4
169,445 - Ac3H11_886 0.48 -0.2
169,445 - Ac3H11_886 0.48 -0.2
169,445 - Ac3H11_886 0.48 +0.9
169,447 - Ac3H11_886 0.49 +1.4
169,447 - Ac3H11_886 0.49 +0.0
169,474 + Ac3H11_886 0.54 -0.4
169,474 + Ac3H11_886 0.54 +0.7
169,474 + Ac3H11_886 0.54 +1.9
169,474 + Ac3H11_886 0.54 +0.5
169,474 + Ac3H11_886 0.54 +0.5
169,474 + Ac3H11_886 0.54 +1.6
169,474 + Ac3H11_886 0.54 +1.5
169,475 - Ac3H11_886 0.54 -0.4
169,475 - Ac3H11_886 0.54 +0.1
169,475 - Ac3H11_886 0.54 -1.2
169,475 - Ac3H11_886 0.54 +1.0
169,475 - Ac3H11_886 0.54 +0.5
169,475 - Ac3H11_886 0.54 +0.8
169,475 - Ac3H11_886 0.54 +1.0
169,475 - Ac3H11_886 0.54 +1.0
169,489 + Ac3H11_886 0.56 -0.4
169,489 + Ac3H11_886 0.56 +0.1
169,658 - Ac3H11_886 0.87 -0.1
169,866 + +1.2
169,866 + -0.1
169,880 + -0.3

Or see this region's nucleotide sequence