Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_721

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_719 and Ac3H11_720 are separated by 164 nucleotidesAc3H11_720 and Ac3H11_721 are separated by 97 nucleotidesAc3H11_721 and Ac3H11_722 are separated by 218 nucleotides Ac3H11_719 - Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate, at 9,069 to 10,439 _719 Ac3H11_720 - putative inner membrane protein, at 10,604 to 11,050 _720 Ac3H11_721 - Phosphate starvation-inducible protein PsiF, at 11,148 to 11,489 _721 Ac3H11_722 - Arginyl-tRNA synthetase (EC 6.1.1.19), at 11,708 to 13,429 _722 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 10.749 kb on - strand, within Ac3H11_720at 11.048 kb on + strandat 11.049 kb on - strandat 11.049 kb on - strandat 11.061 kb on + strandat 11.062 kb on - strandat 11.062 kb on - strandat 11.069 kb on + strandat 11.070 kb on - strandat 11.105 kb on + strandat 11.105 kb on + strandat 11.106 kb on - strandat 11.106 kb on - strandat 11.106 kb on - strandat 11.149 kb on + strandat 11.149 kb on + strandat 11.149 kb on + strandat 11.149 kb on + strandat 11.150 kb on - strandat 11.150 kb on - strandat 11.504 kb on + strandat 11.504 kb on + strandat 11.504 kb on + strandat 11.504 kb on + strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.505 kb on - strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.543 kb on + strandat 11.544 kb on - strandat 11.544 kb on - strandat 11.544 kb on - strandat 11.544 kb on - strandat 11.581 kb on - strandat 11.697 kb on - strandat 11.697 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
10,749 - Ac3H11_720 0.32 +0.1
10,749 - Ac3H11_720 0.32 +1.6
10,749 - Ac3H11_720 0.32 +1.5
10,749 - Ac3H11_720 0.32 +0.4
10,749 - Ac3H11_720 0.32 -2.2
10,749 - Ac3H11_720 0.32 -0.6
11,048 + +0.4
11,049 - -0.1
11,049 - -0.2
11,061 + -1.2
11,062 - -1.1
11,062 - +0.6
11,069 + -1.0
11,070 - -0.6
11,105 + +1.1
11,105 + +0.2
11,106 - -0.3
11,106 - +0.5
11,106 - -1.3
11,149 + -1.0
11,149 + +2.6
11,149 + +1.0
11,149 + +0.5
11,150 - -0.2
11,150 - -0.4
11,504 + -0.8
11,504 + +2.6
11,504 + +1.0
11,504 + -0.5
11,505 - +0.2
11,505 - -0.2
11,505 - +1.6
11,505 - -0.1
11,505 - +0.0
11,505 - +0.1
11,543 + -0.3
11,543 + +2.0
11,543 + -0.4
11,543 + -0.7
11,543 + -2.7
11,544 - -0.5
11,544 - +0.6
11,544 - -1.1
11,544 - +0.3
11,581 - -1.0
11,697 - -2.0
11,697 - -0.7

Or see this region's nucleotide sequence