Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_665

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_664 and Ac3H11_665 are separated by 202 nucleotidesAc3H11_665 and Ac3H11_666 are separated by 185 nucleotides Ac3H11_664 - 5'-methylthioadenosine nucleosidase (EC 3.2.2.16) @ S-adenosylhomocysteine nucleosidase (EC 3.2.2.9), at 21,379 to 22,134 _664 Ac3H11_665 - Magnesium and cobalt transport protein CorA, at 22,337 to 23,323 _665 Ac3H11_666 - Bacteriophage-related DNA polymerase, at 23,509 to 24,279 _666 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1 2at 21.378 kb on + strandat 21.379 kb on - strandat 21.379 kb on - strandat 21.385 kb on - strandat 21.385 kb on - strandat 21.385 kb on - strandat 21.385 kb on - strandat 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.661 kb on + strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.662 kb on - strand, within Ac3H11_664at 21.718 kb on + strand, within Ac3H11_664at 21.719 kb on - strand, within Ac3H11_664at 21.995 kb on - strand, within Ac3H11_664at 22.211 kb on + strandat 22.211 kb on + strandat 22.212 kb on - strandat 22.212 kb on - strandat 22.212 kb on - strandat 22.224 kb on - strandat 22.224 kb on - strandat 22.338 kb on + strandat 22.338 kb on + strandat 22.338 kb on + strandat 22.339 kb on - strandat 22.339 kb on - strandat 22.339 kb on - strandat 23.410 kb on - strandat 23.410 kb on - strandat 23.422 kb on - strandat 23.469 kb on - strandat 24.280 kb on - strandat 24.280 kb on - strandat 24.280 kb on - strandat 24.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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21,378 + -2.3
21,379 - +0.8
21,379 - +0.8
21,385 - +0.5
21,385 - -0.8
21,385 - -2.5
21,385 - -0.6
21,661 + Ac3H11_664 0.37 -0.6
21,661 + Ac3H11_664 0.37 +1.2
21,661 + Ac3H11_664 0.37 +0.6
21,661 + Ac3H11_664 0.37 +1.2
21,661 + Ac3H11_664 0.37 +0.2
21,662 - Ac3H11_664 0.37 +2.1
21,662 - Ac3H11_664 0.37 +0.1
21,662 - Ac3H11_664 0.37 +1.8
21,662 - Ac3H11_664 0.37 +0.4
21,662 - Ac3H11_664 0.37 -1.8
21,662 - Ac3H11_664 0.37 -0.7
21,718 + Ac3H11_664 0.45 -0.2
21,719 - Ac3H11_664 0.45 -0.3
21,995 - Ac3H11_664 0.81 +0.4
22,211 + +1.3
22,211 + +0.7
22,212 - +0.2
22,212 - -0.6
22,212 - +1.0
22,224 - +0.1
22,224 - -1.7
22,338 + -1.3
22,338 + +1.6
22,338 + +1.4
22,339 - +0.5
22,339 - -0.9
22,339 - +0.0
23,410 - -0.9
23,410 - -0.1
23,422 - +0.3
23,469 - -0.9
24,280 - +0.6
24,280 - -1.1
24,280 - -1.4
24,280 - +0.0

Or see this region's nucleotide sequence