Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_505

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_504 and Ac3H11_505 are separated by 125 nucleotidesAc3H11_505 and Ac3H11_506 are separated by 184 nucleotidesAc3H11_506 and Ac3H11_507 are separated by 87 nucleotides Ac3H11_504 - FIG00348850: hypothetical protein, at 200,091 to 200,912 _504 Ac3H11_505 - Transcriptional regulator, TetR family, at 201,038 to 201,643 _505 Ac3H11_506 - biphenyl-2,3-diol 1,2-dioxygenase III-related protein, at 201,828 to 202,214 _506 Ac3H11_507 - Thymidine phosphorylase (EC 2.4.2.4), at 202,302 to 204,578 _507 Position (kb) 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 200.113 kb on + strandat 200.113 kb on + strandat 200.113 kb on + strandat 200.114 kb on - strandat 200.114 kb on - strandat 200.191 kb on + strand, within Ac3H11_504at 200.192 kb on - strand, within Ac3H11_504at 200.192 kb on - strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.398 kb on + strand, within Ac3H11_504at 200.399 kb on - strand, within Ac3H11_504at 200.399 kb on - strand, within Ac3H11_504at 200.952 kb on + strandat 200.952 kb on + strandat 200.953 kb on - strandat 200.953 kb on - strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.976 kb on + strandat 200.977 kb on - strandat 200.998 kb on - strandat 201.007 kb on + strandat 201.007 kb on + strandat 201.008 kb on - strandat 201.011 kb on + strandat 201.027 kb on + strandat 201.128 kb on + strand, within Ac3H11_505at 201.128 kb on + strand, within Ac3H11_505at 201.128 kb on + strand, within Ac3H11_505at 201.129 kb on - strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.188 kb on + strand, within Ac3H11_505at 201.189 kb on - strand, within Ac3H11_505at 201.189 kb on - strand, within Ac3H11_505at 201.230 kb on + strand, within Ac3H11_505at 201.230 kb on + strand, within Ac3H11_505at 201.231 kb on - strand, within Ac3H11_505at 201.231 kb on - strand, within Ac3H11_505at 201.231 kb on - strand, within Ac3H11_505at 201.326 kb on + strand, within Ac3H11_505at 201.326 kb on + strand, within Ac3H11_505at 201.327 kb on - strand, within Ac3H11_505at 201.831 kb on + strandat 201.831 kb on + strandat 201.831 kb on + strandat 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.871 kb on + strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.872 kb on - strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.875 kb on + strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.876 kb on - strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.877 kb on + strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 201.878 kb on - strand, within Ac3H11_506at 202.094 kb on - strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.141 kb on + strand, within Ac3H11_506at 202.267 kb on + strandat 202.268 kb on - strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.298 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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200,113 + +1.6
200,113 + -0.8
200,113 + -2.4
200,114 - +2.2
200,114 - -0.7
200,191 + Ac3H11_504 0.12 +0.7
200,192 - Ac3H11_504 0.12 -1.5
200,192 - Ac3H11_504 0.12 -2.9
200,398 + Ac3H11_504 0.37 -0.1
200,398 + Ac3H11_504 0.37 -0.4
200,398 + Ac3H11_504 0.37 -1.6
200,399 - Ac3H11_504 0.37 -0.2
200,399 - Ac3H11_504 0.37 -1.0
200,952 + +0.9
200,952 + -0.6
200,953 - -0.2
200,953 - -0.5
200,976 + +0.3
200,976 + +1.7
200,976 + +2.5
200,976 + +0.5
200,976 + -2.5
200,976 + -0.5
200,977 - +0.7
200,998 - -0.7
201,007 + -0.3
201,007 + +1.5
201,008 - +0.0
201,011 + -1.0
201,027 + +2.1
201,128 + Ac3H11_505 0.15 -1.2
201,128 + Ac3H11_505 0.15 -0.7
201,128 + Ac3H11_505 0.15 +0.0
201,129 - Ac3H11_505 0.15 -1.2
201,188 + Ac3H11_505 0.25 +0.5
201,188 + Ac3H11_505 0.25 +1.5
201,188 + Ac3H11_505 0.25 -1.7
201,188 + Ac3H11_505 0.25 -1.0
201,188 + Ac3H11_505 0.25 +0.5
201,189 - Ac3H11_505 0.25 -1.3
201,189 - Ac3H11_505 0.25 -0.3
201,230 + Ac3H11_505 0.32 -1.3
201,230 + Ac3H11_505 0.32 +1.5
201,231 - Ac3H11_505 0.32 +0.4
201,231 - Ac3H11_505 0.32 -1.0
201,231 - Ac3H11_505 0.32 +0.5
201,326 + Ac3H11_505 0.48 -0.3
201,326 + Ac3H11_505 0.48 +0.2
201,327 - Ac3H11_505 0.48 -0.1
201,831 + -1.1
201,831 + +2.1
201,831 + +0.7
201,871 + Ac3H11_506 0.11 +1.6
201,871 + Ac3H11_506 0.11 +1.6
201,871 + Ac3H11_506 0.11 +0.3
201,871 + Ac3H11_506 0.11 +1.0
201,871 + Ac3H11_506 0.11 +0.7
201,872 - Ac3H11_506 0.11 -1.7
201,872 - Ac3H11_506 0.11 +0.7
201,872 - Ac3H11_506 0.11 -0.4
201,872 - Ac3H11_506 0.11 -0.3
201,872 - Ac3H11_506 0.11 -0.1
201,872 - Ac3H11_506 0.11 -1.0
201,872 - Ac3H11_506 0.11 +0.6
201,875 + Ac3H11_506 0.12 -0.4
201,875 + Ac3H11_506 0.12 -0.5
201,875 + Ac3H11_506 0.12 +0.5
201,875 + Ac3H11_506 0.12 -2.4
201,876 - Ac3H11_506 0.12 -0.1
201,876 - Ac3H11_506 0.12 +1.6
201,876 - Ac3H11_506 0.12 +0.8
201,876 - Ac3H11_506 0.12 +0.4
201,876 - Ac3H11_506 0.12 -1.4
201,876 - Ac3H11_506 0.12 +2.0
201,876 - Ac3H11_506 0.12 +0.8
201,876 - Ac3H11_506 0.12 +1.4
201,876 - Ac3H11_506 0.12 -0.3
201,876 - Ac3H11_506 0.12 -0.2
201,877 + Ac3H11_506 0.13 -1.0
201,877 + Ac3H11_506 0.13 -0.4
201,877 + Ac3H11_506 0.13 -1.2
201,877 + Ac3H11_506 0.13 +0.0
201,877 + Ac3H11_506 0.13 +2.1
201,877 + Ac3H11_506 0.13 -2.0
201,877 + Ac3H11_506 0.13 -0.2
201,877 + Ac3H11_506 0.13 -0.4
201,878 - Ac3H11_506 0.13 +0.5
201,878 - Ac3H11_506 0.13 -0.9
201,878 - Ac3H11_506 0.13 -0.7
201,878 - Ac3H11_506 0.13 +0.7
201,878 - Ac3H11_506 0.13 +0.2
201,878 - Ac3H11_506 0.13 -1.6
202,094 - Ac3H11_506 0.69 +0.1
202,141 + Ac3H11_506 0.81 +0.0
202,141 + Ac3H11_506 0.81 -1.8
202,141 + Ac3H11_506 0.81 -0.4
202,141 + Ac3H11_506 0.81 +0.8
202,267 + -1.3
202,268 - +0.2
202,278 + +2.5
202,278 + +0.1
202,298 + +2.5

Or see this region's nucleotide sequence