Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4791

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4790 and Ac3H11_4791 are separated by 109 nucleotidesAc3H11_4791 and Ac3H11_4792 overlap by 1 nucleotidesAc3H11_4792 and Ac3H11_4793 are separated by 98 nucleotides Ac3H11_4790 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 89,498 to 90,727 _4790 Ac3H11_4791 - FAD/FMN-containing dehydrogenases, at 90,837 to 94,754 _4791 Ac3H11_4792 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 94,754 to 95,194 _4792 Ac3H11_4793 - FIG028220: hypothetical protein co-occurring with HEAT repeat protein, at 95,293 to 95,715 _4793 Position (kb) 90 91 92 93 94 95Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 89.936 kb on + strand, within Ac3H11_4790at 89.937 kb on - strand, within Ac3H11_4790at 89.937 kb on - strand, within Ac3H11_4790at 89.937 kb on - strand, within Ac3H11_4790at 89.972 kb on + strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.020 kb on - strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.042 kb on + strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.043 kb on - strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.440 kb on + strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.441 kb on - strand, within Ac3H11_4790at 90.605 kb on + strandat 90.605 kb on + strandat 90.632 kb on + strandat 90.633 kb on - strandat 90.633 kb on - strandat 90.805 kb on + strandat 90.805 kb on + strandat 90.805 kb on + strandat 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.862 kb on + strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 94.863 kb on - strand, within Ac3H11_4792at 95.181 kb on + strandat 95.278 kb on + strandat 95.278 kb on + strandat 95.279 kb on - strandat 95.279 kb on - strandat 95.279 kb on - strandat 95.419 kb on + strand, within Ac3H11_4793at 95.419 kb on + strand, within Ac3H11_4793at 95.419 kb on + strand, within Ac3H11_4793at 95.419 kb on + strand, within Ac3H11_4793at 95.420 kb on - strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.521 kb on + strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strandat 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.522 kb on - strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.578 kb on + strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.579 kb on - strand, within Ac3H11_4793at 95.584 kb on + strand, within Ac3H11_4793at 95.585 kb on - strand, within Ac3H11_4793at 95.585 kb on - strand, within Ac3H11_4793at 95.585 kb on - strand, within Ac3H11_4793at 95.624 kb on - strand, within Ac3H11_4793

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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89,936 + Ac3H11_4790 0.36 -0.8
89,937 - Ac3H11_4790 0.36 -0.6
89,937 - Ac3H11_4790 0.36 -0.8
89,937 - Ac3H11_4790 0.36 -1.5
89,972 + Ac3H11_4790 0.39 +0.8
90,020 - Ac3H11_4790 0.42 -0.4
90,020 - Ac3H11_4790 0.42 +2.6
90,020 - Ac3H11_4790 0.42 +0.3
90,020 - Ac3H11_4790 0.42 +0.6
90,042 + Ac3H11_4790 0.44 +0.2
90,042 + Ac3H11_4790 0.44 +0.2
90,042 + Ac3H11_4790 0.44 -2.4
90,042 + Ac3H11_4790 0.44 +0.2
90,042 + Ac3H11_4790 0.44 -0.9
90,042 + Ac3H11_4790 0.44 +0.6
90,042 + Ac3H11_4790 0.44 -0.4
90,042 + Ac3H11_4790 0.44 +1.0
90,043 - Ac3H11_4790 0.44 +0.2
90,043 - Ac3H11_4790 0.44 +0.1
90,043 - Ac3H11_4790 0.44 +0.3
90,043 - Ac3H11_4790 0.44 -0.8
90,043 - Ac3H11_4790 0.44 +1.1
90,043 - Ac3H11_4790 0.44 -1.8
90,440 + Ac3H11_4790 0.77 +0.3
90,440 + Ac3H11_4790 0.77 +0.8
90,440 + Ac3H11_4790 0.77 -0.5
90,440 + Ac3H11_4790 0.77 -0.6
90,440 + Ac3H11_4790 0.77 +1.6
90,441 - Ac3H11_4790 0.77 -1.8
90,441 - Ac3H11_4790 0.77 -0.0
90,441 - Ac3H11_4790 0.77 +0.1
90,441 - Ac3H11_4790 0.77 +0.3
90,605 + -1.7
90,605 + +1.6
90,632 + +0.6
90,633 - -0.7
90,633 - +1.9
90,805 + -1.9
90,805 + -2.2
90,805 + +0.1
94,862 + Ac3H11_4792 0.24 +1.0
94,862 + Ac3H11_4792 0.24 +1.3
94,862 + Ac3H11_4792 0.24 -0.6
94,862 + Ac3H11_4792 0.24 -0.5
94,862 + Ac3H11_4792 0.24 -0.9
94,862 + Ac3H11_4792 0.24 +0.3
94,862 + Ac3H11_4792 0.24 -0.2
94,862 + Ac3H11_4792 0.24 +1.0
94,862 + Ac3H11_4792 0.24 -2.5
94,862 + Ac3H11_4792 0.24 -2.9
94,862 + Ac3H11_4792 0.24 +2.1
94,862 + Ac3H11_4792 0.24 -0.3
94,862 + Ac3H11_4792 0.24 +0.7
94,863 - Ac3H11_4792 0.25 -0.0
94,863 - Ac3H11_4792 0.25 +0.3
94,863 - Ac3H11_4792 0.25 -1.8
94,863 - Ac3H11_4792 0.25 +0.4
94,863 - Ac3H11_4792 0.25 +0.6
94,863 - Ac3H11_4792 0.25 +0.5
94,863 - Ac3H11_4792 0.25 +0.8
94,863 - Ac3H11_4792 0.25 +0.7
95,181 + -1.3
95,278 + -0.3
95,278 + -1.9
95,279 - +1.1
95,279 - +1.5
95,279 - +1.5
95,419 + Ac3H11_4793 0.30 -0.3
95,419 + Ac3H11_4793 0.30 +0.6
95,419 + Ac3H11_4793 0.30 +0.1
95,419 + Ac3H11_4793 0.30 -0.6
95,420 - Ac3H11_4793 0.30 +1.0
95,521 + Ac3H11_4793 0.54 +1.5
95,521 + Ac3H11_4793 0.54 +0.1
95,521 + Ac3H11_4793 0.54 +0.5
95,521 + Ac3H11_4793 0.54 -0.8
95,521 + Ac3H11_4793 0.54 +0.4
95,521 + Ac3H11_4793 0.54 -0.9
95,521 + Ac3H11_4793 0.54 -1.0
95,521 + Ac3H11_4793 0.54 -0.6
95,521 + Ac3H11_4793 0.54 -1.8
95,521 + Ac3H11_4793 0.54 +0.7
95,521 + Ac3H11_4793 0.54 -0.5
95,522 - Ac3H11_4793 0.54 -1.0
95,522 - Ac3H11_4793 0.54 -1.1
95,522 - Ac3H11_4793 0.54 +1.4
95,522 - +2.6
95,522 - Ac3H11_4793 0.54 -0.7
95,522 - Ac3H11_4793 0.54 +2.1
95,522 - Ac3H11_4793 0.54 -0.7
95,522 - Ac3H11_4793 0.54 +0.7
95,522 - Ac3H11_4793 0.54 +0.9
95,522 - Ac3H11_4793 0.54 +0.1
95,522 - Ac3H11_4793 0.54 +2.5
95,578 + Ac3H11_4793 0.67 -0.3
95,578 + Ac3H11_4793 0.67 -0.3
95,578 + Ac3H11_4793 0.67 -1.0
95,578 + Ac3H11_4793 0.67 +0.1
95,578 + Ac3H11_4793 0.67 +3.6
95,578 + Ac3H11_4793 0.67 +1.0
95,578 + Ac3H11_4793 0.67 -0.5
95,579 - Ac3H11_4793 0.68 -0.4
95,579 - Ac3H11_4793 0.68 -1.3
95,579 - Ac3H11_4793 0.68 +0.4
95,579 - Ac3H11_4793 0.68 +1.6
95,579 - Ac3H11_4793 0.68 +0.3
95,584 + Ac3H11_4793 0.69 -0.4
95,585 - Ac3H11_4793 0.69 +0.4
95,585 - Ac3H11_4793 0.69 +1.4
95,585 - Ac3H11_4793 0.69 +1.4
95,624 - Ac3H11_4793 0.78 -0.9

Or see this region's nucleotide sequence