Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4712

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4711 and Ac3H11_4712 are separated by 276 nucleotidesAc3H11_4712 and Ac3H11_4713 overlap by 4 nucleotidesAc3H11_4713 and Ac3H11_4714 are separated by 36 nucleotides Ac3H11_4711 - Glutamate synthase [NADPH] small chain (EC 1.4.1.13), at 22,191 to 23,669 _4711 Ac3H11_4712 - Methionine ABC transporter ATP-binding protein, at 23,946 to 24,809 _4712 Ac3H11_4713 - Uncharacterized ABC transporter, permease component YrbE, at 24,806 to 25,588 _4713 Ac3H11_4714 - Uncharacterized ABC transporter, periplasmic component YrbD, at 25,625 to 26,113 _4714 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 23.226 kb on + strand, within Ac3H11_4711at 23.226 kb on + strand, within Ac3H11_4711at 23.400 kb on + strand, within Ac3H11_4711at 23.400 kb on + strand, within Ac3H11_4711at 23.400 kb on + strand, within Ac3H11_4711at 23.400 kb on + strand, within Ac3H11_4711at 23.401 kb on - strand, within Ac3H11_4711at 23.401 kb on - strand, within Ac3H11_4711at 23.527 kb on - strandat 23.650 kb on - strandat 23.650 kb on - strandat 23.760 kb on + strandat 23.760 kb on + strandat 23.892 kb on + strandat 23.892 kb on + strandat 23.892 kb on + strandat 23.892 kb on + strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 23.893 kb on - strandat 24.039 kb on + strand, within Ac3H11_4712at 24.040 kb on - strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.228 kb on + strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.229 kb on - strand, within Ac3H11_4712at 24.422 kb on - strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.489 kb on + strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.490 kb on - strand, within Ac3H11_4712at 24.754 kb on - strandat 24.815 kb on + strandat 24.815 kb on + strandat 24.815 kb on + strandat 24.816 kb on - strandat 24.816 kb on - strandat 24.816 kb on - strandat 24.965 kb on + strand, within Ac3H11_4713at 24.965 kb on + strand, within Ac3H11_4713at 24.965 kb on + strand, within Ac3H11_4713at 24.965 kb on + strand, within Ac3H11_4713at 24.965 kb on + strand, within Ac3H11_4713at 24.965 kb on + strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 24.966 kb on - strand, within Ac3H11_4713at 25.028 kb on + strand, within Ac3H11_4713at 25.028 kb on + strand, within Ac3H11_4713at 25.029 kb on - strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.031 kb on + strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.032 kb on - strand, within Ac3H11_4713at 25.046 kb on + strand, within Ac3H11_4713at 25.582 kb on + strandat 25.582 kb on + strandat 25.582 kb on + strandat 25.582 kb on + strandat 25.582 kb on + strandat 25.582 kb on + strandat 25.582 kb on + strandat 25.583 kb on - strandat 25.583 kb on - strandat 25.583 kb on - strandat 25.583 kb on - strandat 25.742 kb on + strand, within Ac3H11_4714at 25.742 kb on + strand, within Ac3H11_4714

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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23,226 + Ac3H11_4711 0.70 +0.3
23,226 + Ac3H11_4711 0.70 +0.6
23,400 + Ac3H11_4711 0.82 +1.3
23,400 + Ac3H11_4711 0.82 -0.6
23,400 + Ac3H11_4711 0.82 -0.5
23,400 + Ac3H11_4711 0.82 -1.1
23,401 - Ac3H11_4711 0.82 +0.1
23,401 - Ac3H11_4711 0.82 -1.5
23,527 - -0.5
23,650 - -0.5
23,650 - +2.2
23,760 + +0.7
23,760 + +0.3
23,892 + +1.1
23,892 + +0.6
23,892 + +0.3
23,892 + -1.4
23,893 - +1.2
23,893 - +3.0
23,893 - +0.7
23,893 - +0.3
23,893 - +0.9
23,893 - +3.0
23,893 - +2.5
23,893 - +0.6
23,893 - +0.2
23,893 - +2.6
24,039 + Ac3H11_4712 0.11 -0.5
24,040 - Ac3H11_4712 0.11 +0.7
24,228 + Ac3H11_4712 0.33 -1.1
24,228 + Ac3H11_4712 0.33 +3.4
24,228 + Ac3H11_4712 0.33 +2.2
24,228 + Ac3H11_4712 0.33 -0.8
24,228 + Ac3H11_4712 0.33 +2.2
24,228 + Ac3H11_4712 0.33 +3.1
24,228 + Ac3H11_4712 0.33 +1.5
24,228 + Ac3H11_4712 0.33 +3.5
24,228 + Ac3H11_4712 0.33 +3.7
24,228 + Ac3H11_4712 0.33 -0.9
24,228 + Ac3H11_4712 0.33 +2.1
24,228 + Ac3H11_4712 0.33 +2.3
24,228 + Ac3H11_4712 0.33 +2.3
24,228 + Ac3H11_4712 0.33 +0.6
24,228 + Ac3H11_4712 0.33 +1.8
24,228 + Ac3H11_4712 0.33 +2.4
24,228 + Ac3H11_4712 0.33 +1.2
24,229 - Ac3H11_4712 0.33 +1.0
24,229 - Ac3H11_4712 0.33 +0.7
24,229 - Ac3H11_4712 0.33 +0.3
24,229 - Ac3H11_4712 0.33 +1.4
24,229 - Ac3H11_4712 0.33 +1.6
24,229 - Ac3H11_4712 0.33 +1.8
24,229 - Ac3H11_4712 0.33 +1.3
24,229 - Ac3H11_4712 0.33 +1.9
24,229 - Ac3H11_4712 0.33 +1.5
24,229 - Ac3H11_4712 0.33 -1.3
24,422 - Ac3H11_4712 0.55 +0.6
24,489 + Ac3H11_4712 0.63 +2.4
24,489 + Ac3H11_4712 0.63 +0.1
24,489 + Ac3H11_4712 0.63 +1.2
24,489 + Ac3H11_4712 0.63 -0.9
24,489 + Ac3H11_4712 0.63 +2.1
24,489 + Ac3H11_4712 0.63 -1.3
24,489 + Ac3H11_4712 0.63 +0.8
24,489 + Ac3H11_4712 0.63 +0.3
24,489 + Ac3H11_4712 0.63 -0.0
24,489 + Ac3H11_4712 0.63 +0.6
24,490 - Ac3H11_4712 0.63 +3.0
24,490 - Ac3H11_4712 0.63 +1.3
24,490 - Ac3H11_4712 0.63 -0.4
24,490 - Ac3H11_4712 0.63 +4.3
24,490 - Ac3H11_4712 0.63 +3.1
24,490 - Ac3H11_4712 0.63 +0.6
24,490 - Ac3H11_4712 0.63 +1.3
24,490 - Ac3H11_4712 0.63 +4.3
24,490 - Ac3H11_4712 0.63 +0.8
24,754 - +2.6
24,815 + +2.2
24,815 + +2.8
24,815 + -2.1
24,816 - +1.1
24,816 - +1.5
24,816 - -1.4
24,965 + Ac3H11_4713 0.20 +3.4
24,965 + Ac3H11_4713 0.20 +0.3
24,965 + Ac3H11_4713 0.20 -0.9
24,965 + Ac3H11_4713 0.20 +1.9
24,965 + Ac3H11_4713 0.20 +0.5
24,965 + Ac3H11_4713 0.20 +0.3
24,966 - Ac3H11_4713 0.20 +3.2
24,966 - Ac3H11_4713 0.20 +0.6
24,966 - Ac3H11_4713 0.20 +2.6
24,966 - Ac3H11_4713 0.20 +0.3
24,966 - Ac3H11_4713 0.20 +1.1
24,966 - Ac3H11_4713 0.20 +4.9
24,966 - Ac3H11_4713 0.20 +0.1
24,966 - Ac3H11_4713 0.20 +3.2
24,966 - Ac3H11_4713 0.20 +3.0
24,966 - Ac3H11_4713 0.20 +1.6
25,028 + Ac3H11_4713 0.28 +4.1
25,028 + Ac3H11_4713 0.28 -0.4
25,029 - Ac3H11_4713 0.28 -0.7
25,031 + Ac3H11_4713 0.29 -1.5
25,031 + Ac3H11_4713 0.29 +1.8
25,031 + Ac3H11_4713 0.29 +3.6
25,031 + Ac3H11_4713 0.29 +0.2
25,031 + Ac3H11_4713 0.29 +1.8
25,031 + Ac3H11_4713 0.29 +3.1
25,031 + Ac3H11_4713 0.29 +5.1
25,032 - Ac3H11_4713 0.29 +1.0
25,032 - Ac3H11_4713 0.29 +2.7
25,032 - Ac3H11_4713 0.29 -0.2
25,032 - Ac3H11_4713 0.29 +0.8
25,032 - Ac3H11_4713 0.29 +2.3
25,032 - Ac3H11_4713 0.29 +2.7
25,032 - Ac3H11_4713 0.29 +3.0
25,032 - Ac3H11_4713 0.29 +2.3
25,032 - Ac3H11_4713 0.29 +2.8
25,032 - Ac3H11_4713 0.29 +1.4
25,046 + Ac3H11_4713 0.31 +3.4
25,582 + +2.6
25,582 + +4.6
25,582 + +3.6
25,582 + +1.3
25,582 + -0.5
25,582 + -0.9
25,582 + +3.2
25,583 - +3.6
25,583 - +1.1
25,583 - +4.2
25,583 - -0.2
25,742 + Ac3H11_4714 0.24 +0.8
25,742 + Ac3H11_4714 0.24 +1.4

Or see this region's nucleotide sequence