Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_4206 and Ac3H11_4207 are separated by 114 nucleotides Ac3H11_4207 and Ac3H11_4208 are separated by 401 nucleotides Ac3H11_4208 and Ac3H11_4209 are separated by 272 nucleotides
Ac3H11_4206 - SAM-dependent methyltransferases, at 476,004 to 476,624
_4206
Ac3H11_4207 - Flagellar hook-basal body complex protein FliE, at 476,739 to 476,858
_4207
Ac3H11_4208 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 477,260 to 478,243
_4208
Ac3H11_4209 - Heavy metal sensor histidine kinase, at 478,516 to 479,532
_4209
Position (kb) 477
478
479 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 476.280 kb on + strand, within Ac3H11_4206 at 476.281 kb on - strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.298 kb on + strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.299 kb on - strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.305 kb on + strand, within Ac3H11_4206 at 476.306 kb on - strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.412 kb on + strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.413 kb on - strand, within Ac3H11_4206 at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.593 kb on + strand at 476.624 kb on + strand at 476.624 kb on + strand at 476.625 kb on - strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.643 kb on + strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.644 kb on - strand at 476.685 kb on + strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.686 kb on - strand at 476.698 kb on + strand at 476.698 kb on + strand at 476.699 kb on - strand at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.757 kb on + strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.758 kb on - strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.767 kb on + strand, within Ac3H11_4207 at 476.768 kb on - strand, within Ac3H11_4207 at 476.861 kb on + strand at 476.861 kb on + strand at 476.861 kb on + strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.862 kb on - strand at 476.889 kb on - strand at 476.982 kb on + strand at 476.983 kb on - strand at 477.015 kb on + strand at 477.039 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.093 kb on + strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.094 kb on - strand at 477.114 kb on + strand at 477.115 kb on - strand at 477.159 kb on + strand at 477.261 kb on + strand at 477.346 kb on - strand at 477.354 kb on + strand at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.510 kb on + strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.511 kb on - strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.514 kb on + strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.515 kb on - strand, within Ac3H11_4208 at 477.883 kb on - strand, within Ac3H11_4208 at 477.993 kb on + strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 477.994 kb on - strand, within Ac3H11_4208 at 478.081 kb on + strand, within Ac3H11_4208 at 478.082 kb on - strand, within Ac3H11_4208 at 478.082 kb on - strand, within Ac3H11_4208 at 478.082 kb on - strand, within Ac3H11_4208 at 478.095 kb on + strand, within Ac3H11_4208 at 478.095 kb on + strand, within Ac3H11_4208 at 478.095 kb on + strand, within Ac3H11_4208 at 478.096 kb on - strand, within Ac3H11_4208 at 478.096 kb on - strand, within Ac3H11_4208 at 478.096 kb on - strand, within Ac3H11_4208 at 478.145 kb on + strand at 478.145 kb on + strand at 478.146 kb on - strand at 478.147 kb on + strand at 478.147 kb on + strand at 478.148 kb on - strand at 478.148 kb on - strand at 478.148 kb on - strand at 478.148 kb on - strand at 478.243 kb on + strand at 478.243 kb on + strand at 478.243 kb on + strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.244 kb on - strand at 478.247 kb on + strand at 478.248 kb on - strand at 478.275 kb on + strand at 478.276 kb on - strand at 478.302 kb on + strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.303 kb on - strand at 478.329 kb on + strand at 478.329 kb on + strand at 478.329 kb on + strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.330 kb on - strand at 478.385 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.465 kb on + strand at 478.466 kb on - strand at 478.466 kb on - strand at 478.466 kb on - strand at 478.466 kb on - strand at 478.469 kb on + strand at 478.469 kb on + strand at 478.470 kb on - strand at 478.543 kb on + strand at 478.543 kb on + strand at 478.565 kb on + strand at 478.565 kb on + strand at 478.566 kb on - strand at 478.566 kb on - strand at 478.566 kb on - strand at 478.642 kb on - strand, within Ac3H11_4209 at 478.829 kb on + strand, within Ac3H11_4209 at 478.830 kb on - strand, within Ac3H11_4209 at 478.830 kb on - strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.949 kb on + strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 478.950 kb on - strand, within Ac3H11_4209 at 479.072 kb on + strand, within Ac3H11_4209 at 479.072 kb on + strand, within Ac3H11_4209 at 479.115 kb on + strand, within Ac3H11_4209 at 479.115 kb on + strand, within Ac3H11_4209
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 476,280 + Ac3H11_4206 0.44 +2.0 476,281 - Ac3H11_4206 0.45 -0.5 476,298 + Ac3H11_4206 0.47 -0.5 476,298 + Ac3H11_4206 0.47 -0.1 476,298 + Ac3H11_4206 0.47 +1.2 476,299 - Ac3H11_4206 0.48 +0.1 476,299 - Ac3H11_4206 0.48 +2.2 476,299 - Ac3H11_4206 0.48 +0.1 476,299 - Ac3H11_4206 0.48 -1.2 476,299 - Ac3H11_4206 0.48 -0.9 476,299 - Ac3H11_4206 0.48 -0.4 476,305 + Ac3H11_4206 0.48 +0.0 476,305 + Ac3H11_4206 0.48 +3.2 476,305 + Ac3H11_4206 0.48 +1.5 476,306 - Ac3H11_4206 0.49 -3.0 476,412 + Ac3H11_4206 0.66 -1.0 476,412 + Ac3H11_4206 0.66 -0.3 476,412 + Ac3H11_4206 0.66 +0.1 476,413 - Ac3H11_4206 0.66 -1.0 476,413 - Ac3H11_4206 0.66 +2.2 476,593 + +1.1 476,593 + -1.9 476,593 + +0.3 476,593 + +0.1 476,624 + +3.0 476,624 + -1.3 476,625 - -1.5 476,643 + -0.3 476,643 + -0.4 476,643 + +1.6 476,643 + +0.5 476,643 + +0.8 476,644 - -1.6 476,644 - -0.1 476,644 - +1.8 476,644 - +0.8 476,685 + -0.7 476,686 - +0.5 476,686 - -0.1 476,686 - +0.9 476,698 + -1.0 476,698 + +2.5 476,699 - -1.5 476,757 + Ac3H11_4207 0.15 -1.3 476,757 + Ac3H11_4207 0.15 -0.1 476,757 + Ac3H11_4207 0.15 +0.2 476,757 + Ac3H11_4207 0.15 +0.6 476,758 - Ac3H11_4207 0.16 +1.3 476,758 - Ac3H11_4207 0.16 +1.2 476,758 - Ac3H11_4207 0.16 +0.1 476,767 + Ac3H11_4207 0.23 +0.6 476,767 + Ac3H11_4207 0.23 -0.3 476,767 + Ac3H11_4207 0.23 +0.1 476,768 - Ac3H11_4207 0.24 -0.1 476,861 + +0.2 476,861 + +0.5 476,861 + -0.5 476,862 - +1.2 476,862 - +1.0 476,862 - -0.1 476,862 - +0.2 476,889 - -0.2 476,982 + -0.4 476,983 - +0.1 477,015 + -1.0 477,039 + +0.8 477,093 + +1.1 477,093 + +0.5 477,093 + -3.0 477,093 + -0.3 477,093 + -2.9 477,094 - +0.0 477,094 - +0.3 477,094 - +0.9 477,094 - -0.1 477,094 - -0.6 477,114 + +0.5 477,115 - -1.1 477,159 + -1.3 477,261 + -1.3 477,346 - -0.9 477,354 + -0.4 477,510 + Ac3H11_4208 0.25 -0.2 477,510 + Ac3H11_4208 0.25 -0.4 477,510 + Ac3H11_4208 0.25 -0.8 477,511 - Ac3H11_4208 0.26 -0.1 477,511 - Ac3H11_4208 0.26 -0.1 477,511 - Ac3H11_4208 0.26 +1.1 477,511 - Ac3H11_4208 0.26 +1.1 477,511 - Ac3H11_4208 0.26 +2.5 477,511 - Ac3H11_4208 0.26 -1.2 477,511 - Ac3H11_4208 0.26 +0.5 477,514 + Ac3H11_4208 0.26 -0.7 477,514 + Ac3H11_4208 0.26 -0.5 477,514 + Ac3H11_4208 0.26 -0.1 477,514 + Ac3H11_4208 0.26 -1.2 477,514 + Ac3H11_4208 0.26 -0.1 477,515 - Ac3H11_4208 0.26 -0.6 477,515 - Ac3H11_4208 0.26 +0.6 477,515 - Ac3H11_4208 0.26 +1.0 477,515 - Ac3H11_4208 0.26 -0.2 477,515 - Ac3H11_4208 0.26 -0.5 477,515 - Ac3H11_4208 0.26 +0.7 477,883 - Ac3H11_4208 0.63 -1.9 477,993 + Ac3H11_4208 0.74 -0.9 477,994 - Ac3H11_4208 0.75 +2.0 477,994 - Ac3H11_4208 0.75 +0.2 477,994 - Ac3H11_4208 0.75 -0.5 477,994 - Ac3H11_4208 0.75 -3.1 477,994 - Ac3H11_4208 0.75 -0.8 478,081 + Ac3H11_4208 0.83 +0.9 478,082 - Ac3H11_4208 0.84 +1.9 478,082 - Ac3H11_4208 0.84 +1.5 478,082 - Ac3H11_4208 0.84 +1.0 478,095 + Ac3H11_4208 0.85 +1.0 478,095 + Ac3H11_4208 0.85 -2.1 478,095 + Ac3H11_4208 0.85 +0.8 478,096 - Ac3H11_4208 0.85 +1.9 478,096 - Ac3H11_4208 0.85 +0.1 478,096 - Ac3H11_4208 0.85 +2.3 478,145 + +1.0 478,145 + -1.2 478,146 - +0.4 478,147 + -2.1 478,147 + -0.6 478,148 - -1.0 478,148 - -1.9 478,148 - +0.5 478,148 - -0.7 478,243 + -1.0 478,243 + -0.4 478,243 + +0.0 478,244 - -0.5 478,244 - +0.3 478,244 - -0.3 478,244 - -0.5 478,244 - +0.1 478,247 + -1.6 478,248 - +0.8 478,275 + -1.1 478,276 - -0.5 478,302 + -0.5 478,303 - -0.5 478,303 - +0.7 478,303 - +0.0 478,329 + -0.9 478,329 + -0.5 478,329 + -1.1 478,330 - +0.5 478,330 - +0.1 478,330 - +1.4 478,330 - +0.1 478,330 - -1.1 478,385 + -1.4 478,465 + +0.5 478,465 + +0.0 478,465 + +0.8 478,465 + +0.9 478,465 + -2.0 478,465 + +1.9 478,465 + -1.8 478,465 + +0.5 478,465 + -0.2 478,466 - -1.1 478,466 - -1.8 478,466 - +1.3 478,466 - +0.5 478,469 + +0.3 478,469 + -1.3 478,470 - +0.3 478,543 + -0.7 478,543 + -0.7 478,565 + -1.4 478,565 + +0.2 478,566 - -0.7 478,566 - +0.3 478,566 - -0.3 478,642 - Ac3H11_4209 0.12 -0.2 478,829 + Ac3H11_4209 0.31 -0.3 478,830 - Ac3H11_4209 0.31 +0.1 478,830 - Ac3H11_4209 0.31 +0.3 478,949 + Ac3H11_4209 0.43 +0.2 478,949 + Ac3H11_4209 0.43 -0.9 478,949 + Ac3H11_4209 0.43 +0.9 478,949 + Ac3H11_4209 0.43 +1.5 478,949 + Ac3H11_4209 0.43 +0.9 478,949 + Ac3H11_4209 0.43 -2.0 478,950 - Ac3H11_4209 0.43 -1.2 478,950 - Ac3H11_4209 0.43 -1.9 478,950 - Ac3H11_4209 0.43 -1.8 478,950 - Ac3H11_4209 0.43 -1.1 478,950 - Ac3H11_4209 0.43 -0.8 479,072 + Ac3H11_4209 0.55 +1.0 479,072 + Ac3H11_4209 0.55 -0.1 479,115 + Ac3H11_4209 0.59 +1.0 479,115 + Ac3H11_4209 0.59 -0.2
Or see this region's nucleotide sequence