Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4207

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4205 and Ac3H11_4206 are separated by 120 nucleotidesAc3H11_4206 and Ac3H11_4207 are separated by 114 nucleotidesAc3H11_4207 and Ac3H11_4208 are separated by 401 nucleotides Ac3H11_4205 - hypothetical protein, at 475,626 to 475,883 _4205 Ac3H11_4206 - SAM-dependent methyltransferases, at 476,004 to 476,624 _4206 Ac3H11_4207 - Flagellar hook-basal body complex protein FliE, at 476,739 to 476,858 _4207 Ac3H11_4208 - Putative type II restriction enzyme NmeDIP (EC 3.1.21.4) (Endonuclease NmeDIP) (R.NmeDIP), at 477,260 to 478,243 _4208 Position (kb) 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 475.766 kb on - strand, within Ac3H11_4205at 475.852 kb on + strand, within Ac3H11_4205at 475.852 kb on + strand, within Ac3H11_4205at 475.852 kb on + strand, within Ac3H11_4205at 475.852 kb on + strand, within Ac3H11_4205at 475.852 kb on + strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.853 kb on - strand, within Ac3H11_4205at 475.856 kb on + strand, within Ac3H11_4205at 475.856 kb on + strand, within Ac3H11_4205at 475.857 kb on - strand, within Ac3H11_4205at 475.857 kb on - strand, within Ac3H11_4205at 475.882 kb on - strandat 475.891 kb on + strandat 475.891 kb on + strandat 475.972 kb on + strandat 475.973 kb on - strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.032 kb on + strandat 476.033 kb on - strandat 476.137 kb on + strand, within Ac3H11_4206at 476.138 kb on - strand, within Ac3H11_4206at 476.242 kb on + strand, within Ac3H11_4206at 476.242 kb on + strand, within Ac3H11_4206at 476.242 kb on + strand, within Ac3H11_4206at 476.242 kb on + strand, within Ac3H11_4206at 476.243 kb on - strand, within Ac3H11_4206at 476.243 kb on - strand, within Ac3H11_4206at 476.243 kb on - strand, within Ac3H11_4206at 476.243 kb on - strand, within Ac3H11_4206at 476.280 kb on + strand, within Ac3H11_4206at 476.281 kb on - strand, within Ac3H11_4206at 476.298 kb on + strand, within Ac3H11_4206at 476.298 kb on + strand, within Ac3H11_4206at 476.298 kb on + strand, within Ac3H11_4206at 476.299 kb on - strand, within Ac3H11_4206at 476.299 kb on - strand, within Ac3H11_4206at 476.299 kb on - strand, within Ac3H11_4206at 476.299 kb on - strand, within Ac3H11_4206at 476.299 kb on - strand, within Ac3H11_4206at 476.299 kb on - strand, within Ac3H11_4206at 476.305 kb on + strand, within Ac3H11_4206at 476.305 kb on + strand, within Ac3H11_4206at 476.305 kb on + strand, within Ac3H11_4206at 476.306 kb on - strand, within Ac3H11_4206at 476.412 kb on + strand, within Ac3H11_4206at 476.412 kb on + strand, within Ac3H11_4206at 476.412 kb on + strand, within Ac3H11_4206at 476.413 kb on - strand, within Ac3H11_4206at 476.413 kb on - strand, within Ac3H11_4206at 476.593 kb on + strandat 476.593 kb on + strandat 476.593 kb on + strandat 476.593 kb on + strandat 476.624 kb on + strandat 476.624 kb on + strandat 476.625 kb on - strandat 476.643 kb on + strandat 476.643 kb on + strandat 476.643 kb on + strandat 476.643 kb on + strandat 476.643 kb on + strandat 476.644 kb on - strandat 476.644 kb on - strandat 476.644 kb on - strandat 476.644 kb on - strandat 476.685 kb on + strandat 476.686 kb on - strandat 476.686 kb on - strandat 476.686 kb on - strandat 476.698 kb on + strandat 476.698 kb on + strandat 476.699 kb on - strandat 476.757 kb on + strand, within Ac3H11_4207at 476.757 kb on + strand, within Ac3H11_4207at 476.757 kb on + strand, within Ac3H11_4207at 476.757 kb on + strand, within Ac3H11_4207at 476.758 kb on - strand, within Ac3H11_4207at 476.758 kb on - strand, within Ac3H11_4207at 476.758 kb on - strand, within Ac3H11_4207at 476.767 kb on + strand, within Ac3H11_4207at 476.767 kb on + strand, within Ac3H11_4207at 476.767 kb on + strand, within Ac3H11_4207at 476.768 kb on - strand, within Ac3H11_4207at 476.861 kb on + strandat 476.861 kb on + strandat 476.861 kb on + strandat 476.862 kb on - strandat 476.862 kb on - strandat 476.862 kb on - strandat 476.862 kb on - strandat 476.889 kb on - strandat 476.982 kb on + strandat 476.983 kb on - strandat 477.015 kb on + strandat 477.039 kb on + strandat 477.093 kb on + strandat 477.093 kb on + strandat 477.093 kb on + strandat 477.093 kb on + strandat 477.093 kb on + strandat 477.094 kb on - strandat 477.094 kb on - strandat 477.094 kb on - strandat 477.094 kb on - strandat 477.094 kb on - strandat 477.114 kb on + strandat 477.115 kb on - strandat 477.159 kb on + strandat 477.261 kb on + strandat 477.346 kb on - strandat 477.354 kb on + strandat 477.510 kb on + strand, within Ac3H11_4208at 477.510 kb on + strand, within Ac3H11_4208at 477.510 kb on + strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.511 kb on - strand, within Ac3H11_4208at 477.514 kb on + strand, within Ac3H11_4208at 477.514 kb on + strand, within Ac3H11_4208at 477.514 kb on + strand, within Ac3H11_4208at 477.514 kb on + strand, within Ac3H11_4208at 477.514 kb on + strand, within Ac3H11_4208at 477.515 kb on - strand, within Ac3H11_4208at 477.515 kb on - strand, within Ac3H11_4208at 477.515 kb on - strand, within Ac3H11_4208at 477.515 kb on - strand, within Ac3H11_4208at 477.515 kb on - strand, within Ac3H11_4208at 477.515 kb on - strand, within Ac3H11_4208

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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475,766 - Ac3H11_4205 0.54 +1.1
475,852 + Ac3H11_4205 0.88 +0.0
475,852 + Ac3H11_4205 0.88 +0.7
475,852 + Ac3H11_4205 0.88 +0.6
475,852 + Ac3H11_4205 0.88 +1.3
475,852 + Ac3H11_4205 0.88 -1.4
475,853 - Ac3H11_4205 0.88 -0.0
475,853 - Ac3H11_4205 0.88 +0.8
475,853 - Ac3H11_4205 0.88 +0.8
475,853 - Ac3H11_4205 0.88 +0.3
475,853 - Ac3H11_4205 0.88 +0.0
475,853 - Ac3H11_4205 0.88 -0.9
475,853 - Ac3H11_4205 0.88 -0.0
475,853 - Ac3H11_4205 0.88 +0.6
475,853 - Ac3H11_4205 0.88 +0.5
475,853 - Ac3H11_4205 0.88 -0.7
475,853 - Ac3H11_4205 0.88 +0.8
475,856 + Ac3H11_4205 0.89 -1.2
475,856 + Ac3H11_4205 0.89 +0.7
475,857 - Ac3H11_4205 0.90 +0.9
475,857 - Ac3H11_4205 0.90 -0.4
475,882 - +1.1
475,891 + +0.1
475,891 + -0.2
475,972 + -1.0
475,973 - +1.2
476,032 + -1.0
476,032 + +1.1
476,032 + -0.2
476,032 + +0.4
476,032 + -0.9
476,032 + +0.7
476,032 + -0.9
476,032 + -0.8
476,033 - -1.2
476,137 + Ac3H11_4206 0.21 -0.1
476,138 - Ac3H11_4206 0.22 -0.7
476,242 + Ac3H11_4206 0.38 +0.9
476,242 + Ac3H11_4206 0.38 -0.6
476,242 + Ac3H11_4206 0.38 -0.5
476,242 + Ac3H11_4206 0.38 +1.1
476,243 - Ac3H11_4206 0.38 -0.3
476,243 - Ac3H11_4206 0.38 +0.9
476,243 - Ac3H11_4206 0.38 -1.2
476,243 - Ac3H11_4206 0.38 +1.1
476,280 + Ac3H11_4206 0.44 +2.0
476,281 - Ac3H11_4206 0.45 -0.5
476,298 + Ac3H11_4206 0.47 -0.5
476,298 + Ac3H11_4206 0.47 -0.1
476,298 + Ac3H11_4206 0.47 +1.2
476,299 - Ac3H11_4206 0.48 +0.1
476,299 - Ac3H11_4206 0.48 +2.2
476,299 - Ac3H11_4206 0.48 +0.1
476,299 - Ac3H11_4206 0.48 -1.2
476,299 - Ac3H11_4206 0.48 -0.9
476,299 - Ac3H11_4206 0.48 -0.4
476,305 + Ac3H11_4206 0.48 +0.0
476,305 + Ac3H11_4206 0.48 +3.2
476,305 + Ac3H11_4206 0.48 +1.5
476,306 - Ac3H11_4206 0.49 -3.0
476,412 + Ac3H11_4206 0.66 -1.0
476,412 + Ac3H11_4206 0.66 -0.3
476,412 + Ac3H11_4206 0.66 +0.1
476,413 - Ac3H11_4206 0.66 -1.0
476,413 - Ac3H11_4206 0.66 +2.2
476,593 + +1.1
476,593 + -1.9
476,593 + +0.3
476,593 + +0.1
476,624 + +3.0
476,624 + -1.3
476,625 - -1.5
476,643 + -0.3
476,643 + -0.4
476,643 + +1.6
476,643 + +0.5
476,643 + +0.8
476,644 - -1.6
476,644 - -0.1
476,644 - +1.8
476,644 - +0.8
476,685 + -0.7
476,686 - +0.5
476,686 - -0.1
476,686 - +0.9
476,698 + -1.0
476,698 + +2.5
476,699 - -1.5
476,757 + Ac3H11_4207 0.15 -1.3
476,757 + Ac3H11_4207 0.15 -0.1
476,757 + Ac3H11_4207 0.15 +0.2
476,757 + Ac3H11_4207 0.15 +0.6
476,758 - Ac3H11_4207 0.16 +1.3
476,758 - Ac3H11_4207 0.16 +1.2
476,758 - Ac3H11_4207 0.16 +0.1
476,767 + Ac3H11_4207 0.23 +0.6
476,767 + Ac3H11_4207 0.23 -0.3
476,767 + Ac3H11_4207 0.23 +0.1
476,768 - Ac3H11_4207 0.24 -0.1
476,861 + +0.2
476,861 + +0.5
476,861 + -0.5
476,862 - +1.2
476,862 - +1.0
476,862 - -0.1
476,862 - +0.2
476,889 - -0.2
476,982 + -0.4
476,983 - +0.1
477,015 + -1.0
477,039 + +0.8
477,093 + +1.1
477,093 + +0.5
477,093 + -3.0
477,093 + -0.3
477,093 + -2.9
477,094 - +0.0
477,094 - +0.3
477,094 - +0.9
477,094 - -0.1
477,094 - -0.6
477,114 + +0.5
477,115 - -1.1
477,159 + -1.3
477,261 + -1.3
477,346 - -0.9
477,354 + -0.4
477,510 + Ac3H11_4208 0.25 -0.2
477,510 + Ac3H11_4208 0.25 -0.4
477,510 + Ac3H11_4208 0.25 -0.8
477,511 - Ac3H11_4208 0.26 -0.1
477,511 - Ac3H11_4208 0.26 -0.1
477,511 - Ac3H11_4208 0.26 +1.1
477,511 - Ac3H11_4208 0.26 +1.1
477,511 - Ac3H11_4208 0.26 +2.5
477,511 - Ac3H11_4208 0.26 -1.2
477,511 - Ac3H11_4208 0.26 +0.5
477,514 + Ac3H11_4208 0.26 -0.7
477,514 + Ac3H11_4208 0.26 -0.5
477,514 + Ac3H11_4208 0.26 -0.1
477,514 + Ac3H11_4208 0.26 -1.2
477,514 + Ac3H11_4208 0.26 -0.1
477,515 - Ac3H11_4208 0.26 -0.6
477,515 - Ac3H11_4208 0.26 +0.6
477,515 - Ac3H11_4208 0.26 +1.0
477,515 - Ac3H11_4208 0.26 -0.2
477,515 - Ac3H11_4208 0.26 -0.5
477,515 - Ac3H11_4208 0.26 +0.7

Or see this region's nucleotide sequence