Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3836

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3834 and Ac3H11_3835 are separated by 59 nucleotidesAc3H11_3835 and Ac3H11_3836 are separated by 61 nucleotidesAc3H11_3836 and Ac3H11_3837 are separated by 41 nucleotides Ac3H11_3834 - hydrolase, alpha/beta fold family, at 50,355 to 51,245 _3834 Ac3H11_3835 - Probable 5-carboxymethyl-2-hydroxymuconate delta isomerase, at 51,305 to 51,664 _3835 Ac3H11_3836 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85) / Aminodeoxychorismate lyase (EC 4.1.3.38), at 51,726 to 53,558 _3836 Ac3H11_3837 - Quinolinate synthetase (EC 2.5.1.72), at 53,600 to 54,730 _3837 Position (kb) 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1 2at 50.791 kb on - strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.935 kb on + strand, within Ac3H11_3834at 50.994 kb on + strand, within Ac3H11_3834at 50.994 kb on + strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 50.995 kb on - strand, within Ac3H11_3834at 51.115 kb on - strand, within Ac3H11_3834at 51.115 kb on - strand, within Ac3H11_3834at 51.272 kb on + strandat 51.273 kb on - strandat 51.326 kb on + strandat 51.327 kb on - strandat 51.327 kb on - strandat 51.644 kb on + strandat 51.644 kb on + strandat 51.645 kb on - strandat 51.645 kb on - strandat 51.645 kb on - strandat 51.673 kb on + strandat 52.013 kb on - strand, within Ac3H11_3836at 52.037 kb on - strand, within Ac3H11_3836at 52.570 kb on + strand, within Ac3H11_3836at 52.866 kb on + strand, within Ac3H11_3836at 52.866 kb on + strand, within Ac3H11_3836at 52.867 kb on - strand, within Ac3H11_3836at 52.867 kb on - strand, within Ac3H11_3836at 53.122 kb on + strand, within Ac3H11_3836at 53.123 kb on - strand, within Ac3H11_3836at 53.270 kb on - strand, within Ac3H11_3836at 53.270 kb on - strand, within Ac3H11_3836at 53.270 kb on - strand, within Ac3H11_3836at 53.563 kb on - strandat 53.728 kb on + strand, within Ac3H11_3837at 53.728 kb on + strand, within Ac3H11_3837at 53.841 kb on + strand, within Ac3H11_3837at 53.841 kb on + strand, within Ac3H11_3837at 53.842 kb on - strand, within Ac3H11_3837at 53.842 kb on - strand, within Ac3H11_3837at 54.129 kb on + strand, within Ac3H11_3837at 54.130 kb on - strand, within Ac3H11_3837at 54.130 kb on - strand, within Ac3H11_3837at 54.242 kb on + strand, within Ac3H11_3837at 54.242 kb on + strand, within Ac3H11_3837at 54.243 kb on - strand, within Ac3H11_3837at 54.264 kb on + strand, within Ac3H11_3837at 54.265 kb on - strand, within Ac3H11_3837at 54.265 kb on - strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.534 kb on + strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.535 kb on - strand, within Ac3H11_3837at 54.537 kb on + strand, within Ac3H11_3837at 54.537 kb on + strand, within Ac3H11_3837at 54.538 kb on - strand, within Ac3H11_3837

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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50,791 - Ac3H11_3834 0.49 +0.0
50,935 + Ac3H11_3834 0.65 +0.6
50,935 + Ac3H11_3834 0.65 +1.5
50,935 + Ac3H11_3834 0.65 +1.1
50,935 + Ac3H11_3834 0.65 -1.0
50,994 + Ac3H11_3834 0.72 -0.4
50,994 + Ac3H11_3834 0.72 -0.9
50,995 - Ac3H11_3834 0.72 +0.4
50,995 - Ac3H11_3834 0.72 -1.1
50,995 - Ac3H11_3834 0.72 +0.5
51,115 - Ac3H11_3834 0.85 +0.2
51,115 - Ac3H11_3834 0.85 -0.7
51,272 + +0.3
51,273 - -1.3
51,326 + +0.0
51,327 - -1.2
51,327 - -0.3
51,644 + +1.6
51,644 + -0.4
51,645 - +1.5
51,645 - -0.2
51,645 - -0.8
51,673 + -1.0
52,013 - Ac3H11_3836 0.16 +0.5
52,037 - Ac3H11_3836 0.17 -1.0
52,570 + Ac3H11_3836 0.46 +0.4
52,866 + Ac3H11_3836 0.62 -1.7
52,866 + Ac3H11_3836 0.62 +0.6
52,867 - Ac3H11_3836 0.62 -1.8
52,867 - Ac3H11_3836 0.62 -0.3
53,122 + Ac3H11_3836 0.76 -0.4
53,123 - Ac3H11_3836 0.76 -0.7
53,270 - Ac3H11_3836 0.84 -1.5
53,270 - Ac3H11_3836 0.84 -1.7
53,270 - Ac3H11_3836 0.84 +1.3
53,563 - +0.4
53,728 + Ac3H11_3837 0.11 -1.4
53,728 + Ac3H11_3837 0.11 -1.7
53,841 + Ac3H11_3837 0.21 +0.6
53,841 + Ac3H11_3837 0.21 -1.0
53,842 - Ac3H11_3837 0.21 -0.8
53,842 - Ac3H11_3837 0.21 -1.1
54,129 + Ac3H11_3837 0.47 -0.4
54,130 - Ac3H11_3837 0.47 +1.7
54,130 - Ac3H11_3837 0.47 -0.3
54,242 + Ac3H11_3837 0.57 +0.4
54,242 + Ac3H11_3837 0.57 +0.6
54,243 - Ac3H11_3837 0.57 -0.2
54,264 + Ac3H11_3837 0.59 +0.2
54,265 - Ac3H11_3837 0.59 -0.0
54,265 - Ac3H11_3837 0.59 +2.6
54,534 + Ac3H11_3837 0.83 -0.3
54,534 + Ac3H11_3837 0.83 +0.3
54,534 + Ac3H11_3837 0.83 +0.7
54,534 + Ac3H11_3837 0.83 -2.6
54,534 + Ac3H11_3837 0.83 -0.6
54,534 + Ac3H11_3837 0.83 +0.2
54,534 + Ac3H11_3837 0.83 +1.0
54,535 - Ac3H11_3837 0.83 -0.8
54,535 - Ac3H11_3837 0.83 -1.8
54,535 - Ac3H11_3837 0.83 -1.8
54,535 - Ac3H11_3837 0.83 -0.1
54,537 + Ac3H11_3837 0.83 -1.3
54,537 + Ac3H11_3837 0.83 -0.7
54,538 - Ac3H11_3837 0.83 -1.3

Or see this region's nucleotide sequence