Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3724 and Ac3H11_3725 overlap by 4 nucleotides Ac3H11_3725 and Ac3H11_3726 are separated by 193 nucleotides
Ac3H11_3724 - Hydroxymethylpyrimidine ABC transporter, transmembrane component, at 84,410 to 85,330
_3724
Ac3H11_3725 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 85,327 to 86,169
_3725
Ac3H11_3726 - Hydroxymethylpyrimidine ABC transporter, substrate-binding component, at 86,363 to 87,361
_3726
Position (kb) 85
86
87 Strain fitness (log2 ratio) -2
-1
0
1
2 at 84.453 kb on - strand at 84.453 kb on - strand at 84.669 kb on + strand, within Ac3H11_3724 at 84.669 kb on + strand, within Ac3H11_3724 at 84.670 kb on - strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 84.738 kb on + strand, within Ac3H11_3724 at 85.092 kb on + strand, within Ac3H11_3724 at 85.178 kb on + strand, within Ac3H11_3724 at 86.072 kb on + strand, within Ac3H11_3725 at 86.403 kb on + strand at 86.404 kb on - strand at 86.463 kb on + strand, within Ac3H11_3726 at 86.463 kb on + strand, within Ac3H11_3726 at 86.464 kb on - strand, within Ac3H11_3726 at 86.563 kb on - strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.637 kb on + strand, within Ac3H11_3726 at 86.901 kb on + strand, within Ac3H11_3726 at 86.902 kb on - strand, within Ac3H11_3726
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 84,453 - +0.5 84,453 - -1.0 84,669 + Ac3H11_3724 0.28 -0.6 84,669 + Ac3H11_3724 0.28 +0.1 84,670 - Ac3H11_3724 0.28 -1.3 84,738 + Ac3H11_3724 0.36 -0.4 84,738 + Ac3H11_3724 0.36 -1.1 85,092 + Ac3H11_3724 0.74 -0.9 85,178 + Ac3H11_3724 0.83 -0.8 86,072 + Ac3H11_3725 0.88 -1.3 86,403 + -0.4 86,404 - -1.9 86,463 + Ac3H11_3726 0.10 -0.0 86,463 + Ac3H11_3726 0.10 -1.6 86,464 - Ac3H11_3726 0.10 +1.2 86,563 - Ac3H11_3726 0.20 -0.6 86,637 + Ac3H11_3726 0.27 +2.0 86,637 + Ac3H11_3726 0.27 +0.2 86,637 + Ac3H11_3726 0.27 -1.6 86,637 + Ac3H11_3726 0.27 -0.4 86,637 + Ac3H11_3726 0.27 +0.6 86,637 + Ac3H11_3726 0.27 +1.0 86,901 + Ac3H11_3726 0.54 +1.2 86,902 - Ac3H11_3726 0.54 -0.0
Or see this region's nucleotide sequence