Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3719

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3717 and Ac3H11_3718 are separated by 46 nucleotidesAc3H11_3718 and Ac3H11_3719 are separated by 36 nucleotidesAc3H11_3719 and Ac3H11_3720 are separated by 160 nucleotides Ac3H11_3717 - Haloacid dehalogenase, type II (EC 3.8.1.2), at 77,412 to 78,140 _3717 Ac3H11_3718 - hypothetical protein, at 78,187 to 78,357 _3718 Ac3H11_3719 - FIG00978734: hypothetical protein, at 78,394 to 79,617 _3719 Ac3H11_3720 - Uncharacterized PLP-dependent aminotransferase YfdZ, at 79,778 to 81,004 _3720 Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 77.527 kb on + strand, within Ac3H11_3717at 77.527 kb on + strand, within Ac3H11_3717at 77.527 kb on + strand, within Ac3H11_3717at 77.635 kb on + strand, within Ac3H11_3717at 77.635 kb on + strand, within Ac3H11_3717at 77.635 kb on + strand, within Ac3H11_3717at 77.636 kb on - strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.656 kb on + strand, within Ac3H11_3717at 77.657 kb on - strand, within Ac3H11_3717at 77.657 kb on - strand, within Ac3H11_3717at 78.019 kb on + strand, within Ac3H11_3717at 78.019 kb on + strand, within Ac3H11_3717at 78.188 kb on + strandat 78.188 kb on + strandat 78.188 kb on + strandat 78.188 kb on + strandat 78.261 kb on + strand, within Ac3H11_3718at 78.261 kb on + strand, within Ac3H11_3718at 78.261 kb on + strand, within Ac3H11_3718at 78.261 kb on + strand, within Ac3H11_3718at 78.262 kb on - strand, within Ac3H11_3718at 78.290 kb on + strand, within Ac3H11_3718at 78.290 kb on + strand, within Ac3H11_3718at 78.589 kb on + strand, within Ac3H11_3719at 78.590 kb on - strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.682 kb on + strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.683 kb on - strand, within Ac3H11_3719at 78.722 kb on - strand, within Ac3H11_3719at 78.772 kb on + strand, within Ac3H11_3719at 78.772 kb on + strand, within Ac3H11_3719at 78.772 kb on + strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 78.773 kb on - strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.111 kb on + strand, within Ac3H11_3719at 79.112 kb on - strand, within Ac3H11_3719at 79.512 kb on + strandat 79.554 kb on + strandat 79.554 kb on + strandat 79.555 kb on - strandat 79.700 kb on + strandat 79.700 kb on + strandat 79.700 kb on + strandat 79.701 kb on - strandat 79.833 kb on - strandat 79.833 kb on - strandat 79.985 kb on + strand, within Ac3H11_3720at 80.036 kb on + strand, within Ac3H11_3720at 80.036 kb on + strand, within Ac3H11_3720at 80.036 kb on + strand, within Ac3H11_3720at 80.037 kb on - strand, within Ac3H11_3720at 80.172 kb on - strand, within Ac3H11_3720at 80.187 kb on - strand, within Ac3H11_3720at 80.187 kb on - strand, within Ac3H11_3720at 80.187 kb on - strand, within Ac3H11_3720at 80.187 kb on - strand, within Ac3H11_3720at 80.283 kb on - strand, within Ac3H11_3720at 80.283 kb on - strand, within Ac3H11_3720at 80.283 kb on - strand, within Ac3H11_3720at 80.409 kb on + strand, within Ac3H11_3720at 80.410 kb on - strand, within Ac3H11_3720at 80.414 kb on + strand, within Ac3H11_3720at 80.414 kb on + strand, within Ac3H11_3720at 80.415 kb on - strand, within Ac3H11_3720at 80.429 kb on + strand, within Ac3H11_3720at 80.429 kb on + strand, within Ac3H11_3720at 80.430 kb on - strand, within Ac3H11_3720at 80.513 kb on + strand, within Ac3H11_3720at 80.514 kb on - strand, within Ac3H11_3720at 80.591 kb on + strand, within Ac3H11_3720at 80.592 kb on - strand, within Ac3H11_3720at 80.600 kb on + strand, within Ac3H11_3720

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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77,527 + Ac3H11_3717 0.16 -0.2
77,527 + Ac3H11_3717 0.16 +0.7
77,527 + Ac3H11_3717 0.16 -0.6
77,635 + Ac3H11_3717 0.31 -0.9
77,635 + Ac3H11_3717 0.31 -0.8
77,635 + Ac3H11_3717 0.31 -0.6
77,636 - Ac3H11_3717 0.31 +0.0
77,656 + Ac3H11_3717 0.33 -0.4
77,656 + Ac3H11_3717 0.33 +1.0
77,656 + Ac3H11_3717 0.33 +0.6
77,656 + Ac3H11_3717 0.33 -1.8
77,657 - Ac3H11_3717 0.34 -1.7
77,657 - Ac3H11_3717 0.34 -0.1
78,019 + Ac3H11_3717 0.83 -0.0
78,019 + Ac3H11_3717 0.83 -0.5
78,188 + -2.1
78,188 + +0.2
78,188 + -0.1
78,188 + +1.3
78,261 + Ac3H11_3718 0.43 -0.1
78,261 + Ac3H11_3718 0.43 -0.8
78,261 + Ac3H11_3718 0.43 +1.6
78,261 + Ac3H11_3718 0.43 +1.4
78,262 - Ac3H11_3718 0.44 -0.3
78,290 + Ac3H11_3718 0.60 -1.8
78,290 + Ac3H11_3718 0.60 -0.8
78,589 + Ac3H11_3719 0.16 -1.2
78,590 - Ac3H11_3719 0.16 -0.5
78,682 + Ac3H11_3719 0.24 -2.0
78,682 + Ac3H11_3719 0.24 -0.8
78,682 + Ac3H11_3719 0.24 -0.1
78,682 + Ac3H11_3719 0.24 +0.1
78,682 + Ac3H11_3719 0.24 -0.4
78,682 + Ac3H11_3719 0.24 +0.3
78,682 + Ac3H11_3719 0.24 -0.5
78,682 + Ac3H11_3719 0.24 -0.3
78,682 + Ac3H11_3719 0.24 +0.2
78,682 + Ac3H11_3719 0.24 +0.5
78,683 - Ac3H11_3719 0.24 +0.8
78,683 - Ac3H11_3719 0.24 +0.6
78,683 - Ac3H11_3719 0.24 +1.0
78,683 - Ac3H11_3719 0.24 +0.2
78,683 - Ac3H11_3719 0.24 -0.4
78,683 - Ac3H11_3719 0.24 -0.1
78,722 - Ac3H11_3719 0.27 -0.2
78,772 + Ac3H11_3719 0.31 -0.8
78,772 + Ac3H11_3719 0.31 -1.1
78,772 + Ac3H11_3719 0.31 +0.5
78,773 - Ac3H11_3719 0.31 -2.1
78,773 - Ac3H11_3719 0.31 -2.0
78,773 - Ac3H11_3719 0.31 +1.0
78,773 - Ac3H11_3719 0.31 +2.7
79,111 + Ac3H11_3719 0.59 +1.2
79,111 + Ac3H11_3719 0.59 +0.2
79,111 + Ac3H11_3719 0.59 +3.2
79,111 + Ac3H11_3719 0.59 +1.3
79,111 + Ac3H11_3719 0.59 +1.4
79,112 - Ac3H11_3719 0.59 -0.2
79,512 + -1.0
79,554 + -0.4
79,554 + +0.3
79,555 - -0.3
79,700 + -2.6
79,700 + +0.2
79,700 + -2.1
79,701 - +5.9
79,833 - +0.6
79,833 - +0.2
79,985 + Ac3H11_3720 0.17 -0.6
80,036 + Ac3H11_3720 0.21 -0.3
80,036 + Ac3H11_3720 0.21 +0.2
80,036 + Ac3H11_3720 0.21 -1.9
80,037 - Ac3H11_3720 0.21 -1.0
80,172 - Ac3H11_3720 0.32 -0.5
80,187 - Ac3H11_3720 0.33 -0.7
80,187 - Ac3H11_3720 0.33 -2.2
80,187 - Ac3H11_3720 0.33 -0.7
80,187 - Ac3H11_3720 0.33 -1.0
80,283 - Ac3H11_3720 0.41 -1.0
80,283 - Ac3H11_3720 0.41 -0.9
80,283 - Ac3H11_3720 0.41 -0.3
80,409 + Ac3H11_3720 0.51 -1.0
80,410 - Ac3H11_3720 0.52 -1.0
80,414 + Ac3H11_3720 0.52 -0.7
80,414 + Ac3H11_3720 0.52 -0.2
80,415 - Ac3H11_3720 0.52 -1.7
80,429 + Ac3H11_3720 0.53 -1.1
80,429 + Ac3H11_3720 0.53 +0.2
80,430 - Ac3H11_3720 0.53 -0.2
80,513 + Ac3H11_3720 0.60 -1.7
80,514 - Ac3H11_3720 0.60 +1.4
80,591 + Ac3H11_3720 0.66 -1.3
80,592 - Ac3H11_3720 0.66 -0.3
80,600 + Ac3H11_3720 0.67 -1.2

Or see this region's nucleotide sequence