Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_3119 and Ac3H11_3120 are separated by 21 nucleotides Ac3H11_3120 and Ac3H11_3121 overlap by 14 nucleotides Ac3H11_3121 and Ac3H11_3122 are separated by 140 nucleotides
Ac3H11_3119 - OmpA/MotB, at 21,471 to 22,493
_3119
Ac3H11_3120 - hypothetical protein, at 22,515 to 22,745
_3120
Ac3H11_3121 - hypothetical protein, at 22,732 to 22,875
_3121
Ac3H11_3122 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 23,016 to 25,301
_3122
Position (kb)
22
23 Strain fitness (log2 ratio)
-2
-1
0
1 at 21.793 kb on + strand, within Ac3H11_3119 at 21.793 kb on + strand, within Ac3H11_3119 at 21.793 kb on + strand, within Ac3H11_3119 at 21.794 kb on - strand, within Ac3H11_3119 at 21.901 kb on + strand, within Ac3H11_3119 at 21.902 kb on - strand, within Ac3H11_3119 at 21.902 kb on - strand, within Ac3H11_3119 at 21.902 kb on - strand, within Ac3H11_3119 at 21.922 kb on + strand, within Ac3H11_3119 at 21.922 kb on + strand, within Ac3H11_3119 at 21.922 kb on + strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 21.923 kb on - strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.021 kb on + strand, within Ac3H11_3119 at 22.022 kb on - strand, within Ac3H11_3119 at 22.022 kb on - strand, within Ac3H11_3119 at 22.030 kb on + strand, within Ac3H11_3119 at 22.031 kb on - strand, within Ac3H11_3119 at 22.096 kb on + strand, within Ac3H11_3119 at 22.096 kb on + strand, within Ac3H11_3119 at 22.096 kb on + strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.097 kb on - strand, within Ac3H11_3119 at 22.130 kb on - strand, within Ac3H11_3119 at 22.169 kb on - strand, within Ac3H11_3119 at 22.214 kb on - strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.261 kb on + strand, within Ac3H11_3119 at 22.262 kb on - strand, within Ac3H11_3119 at 22.262 kb on - strand, within Ac3H11_3119 at 22.262 kb on - strand, within Ac3H11_3119 at 22.343 kb on - strand, within Ac3H11_3119 at 22.541 kb on + strand, within Ac3H11_3120 at 22.541 kb on + strand, within Ac3H11_3120 at 22.541 kb on + strand, within Ac3H11_3120 at 22.542 kb on - strand, within Ac3H11_3120 at 22.687 kb on + strand, within Ac3H11_3120 at 22.688 kb on - strand, within Ac3H11_3120 at 22.873 kb on + strand at 22.873 kb on + strand at 22.873 kb on + strand at 22.874 kb on - strand at 23.086 kb on + strand at 23.087 kb on - strand at 23.087 kb on - strand at 23.095 kb on + strand at 23.293 kb on + strand, within Ac3H11_3122 at 23.308 kb on + strand, within Ac3H11_3122 at 23.308 kb on + strand, within Ac3H11_3122 at 23.308 kb on + strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.309 kb on - strand, within Ac3H11_3122 at 23.625 kb on - strand, within Ac3H11_3122 at 23.625 kb on - strand, within Ac3H11_3122 at 23.709 kb on + strand, within Ac3H11_3122 at 23.709 kb on + strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122 at 23.710 kb on - strand, within Ac3H11_3122
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 21,793 + Ac3H11_3119 0.31 -1.7 21,793 + Ac3H11_3119 0.31 -1.4 21,793 + Ac3H11_3119 0.31 +1.1 21,794 - Ac3H11_3119 0.32 -0.8 21,901 + Ac3H11_3119 0.42 -1.4 21,902 - Ac3H11_3119 0.42 -1.0 21,902 - Ac3H11_3119 0.42 -1.5 21,902 - Ac3H11_3119 0.42 -2.4 21,922 + Ac3H11_3119 0.44 -1.1 21,922 + Ac3H11_3119 0.44 +1.2 21,922 + Ac3H11_3119 0.44 +0.2 21,923 - Ac3H11_3119 0.44 -0.1 21,923 - Ac3H11_3119 0.44 -0.8 21,923 - Ac3H11_3119 0.44 +0.5 21,923 - Ac3H11_3119 0.44 -0.3 21,923 - Ac3H11_3119 0.44 -0.4 21,923 - Ac3H11_3119 0.44 +1.6 22,021 + Ac3H11_3119 0.54 -0.2 22,021 + Ac3H11_3119 0.54 -1.2 22,021 + Ac3H11_3119 0.54 -0.6 22,021 + Ac3H11_3119 0.54 -0.1 22,021 + Ac3H11_3119 0.54 +1.0 22,022 - Ac3H11_3119 0.54 -1.3 22,022 - Ac3H11_3119 0.54 -2.6 22,030 + Ac3H11_3119 0.55 +0.3 22,031 - Ac3H11_3119 0.55 -0.1 22,096 + Ac3H11_3119 0.61 +0.6 22,096 + Ac3H11_3119 0.61 -0.0 22,096 + Ac3H11_3119 0.61 -1.5 22,097 - Ac3H11_3119 0.61 +0.2 22,097 - Ac3H11_3119 0.61 -1.2 22,097 - Ac3H11_3119 0.61 -1.3 22,097 - Ac3H11_3119 0.61 -0.0 22,130 - Ac3H11_3119 0.64 -2.2 22,169 - Ac3H11_3119 0.68 -1.6 22,214 - Ac3H11_3119 0.73 +0.6 22,261 + Ac3H11_3119 0.77 -0.2 22,261 + Ac3H11_3119 0.77 +0.2 22,261 + Ac3H11_3119 0.77 +0.2 22,261 + Ac3H11_3119 0.77 -0.8 22,261 + Ac3H11_3119 0.77 +0.2 22,261 + Ac3H11_3119 0.77 +0.6 22,262 - Ac3H11_3119 0.77 -1.4 22,262 - Ac3H11_3119 0.77 +0.3 22,262 - Ac3H11_3119 0.77 -1.0 22,343 - Ac3H11_3119 0.85 -2.3 22,541 + Ac3H11_3120 0.11 -2.1 22,541 + Ac3H11_3120 0.11 -1.0 22,541 + Ac3H11_3120 0.11 +1.4 22,542 - Ac3H11_3120 0.12 +0.2 22,687 + Ac3H11_3120 0.74 -0.8 22,688 - Ac3H11_3120 0.75 -0.5 22,873 + +0.2 22,873 + -0.2 22,873 + -0.7 22,874 - +0.9 23,086 + +1.4 23,087 - +1.0 23,087 - -0.1 23,095 + -1.6 23,293 + Ac3H11_3122 0.12 -0.2 23,308 + Ac3H11_3122 0.13 +0.6 23,308 + Ac3H11_3122 0.13 -0.0 23,308 + Ac3H11_3122 0.13 -0.2 23,309 - Ac3H11_3122 0.13 +0.4 23,309 - Ac3H11_3122 0.13 -1.6 23,309 - Ac3H11_3122 0.13 -1.4 23,309 - Ac3H11_3122 0.13 -0.3 23,625 - Ac3H11_3122 0.27 +0.5 23,625 - Ac3H11_3122 0.27 -0.4 23,709 + Ac3H11_3122 0.30 -0.1 23,709 + Ac3H11_3122 0.30 +1.6 23,710 - Ac3H11_3122 0.30 -2.4 23,710 - Ac3H11_3122 0.30 -0.5 23,710 - Ac3H11_3122 0.30 -1.2 23,710 - Ac3H11_3122 0.30 -0.3
Or see this region's nucleotide sequence