Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2780

Experiment: D-Cycloserine 0.05 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Cycloserine 0.05 mg/ml
1,081,800	+		Ac3H11_2779	0.30	+0.5
1,081,801	-		Ac3H11_2779	0.30	-0.3
1,081,801	-		Ac3H11_2779	0.30	-1.5
1,081,801	-		Ac3H11_2779	0.30	+0.6
1,081,812	+		Ac3H11_2779	0.31	+0.1
1,081,812	+		Ac3H11_2779	0.31	-0.3
1,081,830	+		Ac3H11_2779	0.32	+2.1
1,081,830	+		Ac3H11_2779	0.32	-1.4
1,081,830	+		Ac3H11_2779	0.32	-1.0
1,081,830	+		Ac3H11_2779	0.32	-0.2
1,081,830	+		Ac3H11_2779	0.32	+1.8
1,081,830	+		Ac3H11_2779	0.32	+0.6
1,081,830	+		Ac3H11_2779	0.32	-0.9
1,081,830	+		Ac3H11_2779	0.32	-0.3
1,081,831	-		Ac3H11_2779	0.32	-0.8
1,081,831	-		Ac3H11_2779	0.32	+0.9
1,081,831	-		Ac3H11_2779	0.32	-1.3
1,081,831	-		Ac3H11_2779	0.32	-0.2
1,081,831	-		Ac3H11_2779	0.32	+1.3
1,081,831	-		Ac3H11_2779	0.32	-2.9
1,081,831	-		Ac3H11_2779	0.32	+0.7
1,081,831	-		Ac3H11_2779	0.32	+0.9
1,081,831	-		Ac3H11_2779	0.32	-1.2
1,081,831	-		Ac3H11_2779	0.32	+1.3
1,081,831	-		Ac3H11_2779	0.32	+0.6
1,081,831	-		Ac3H11_2779	0.32	+0.3
1,081,886	+		Ac3H11_2779	0.36	+0.2
1,081,986	+		Ac3H11_2779	0.43	-1.2
1,081,986	+		Ac3H11_2779	0.43	-0.6
1,081,987	-		Ac3H11_2779	0.43	-0.9
1,081,987	-		Ac3H11_2779	0.43	-0.5
1,081,987	-		Ac3H11_2779	0.43	+1.5
1,082,025	+		Ac3H11_2779	0.46	+0.1
1,082,026	-		Ac3H11_2779	0.46	-2.9
1,082,082	+		Ac3H11_2779	0.50	-2.9
1,082,083	-		Ac3H11_2779	0.50	+0.4
1,082,133	+		Ac3H11_2779	0.54	-2.7
1,082,133	+		Ac3H11_2779	0.54	+0.2
1,082,133	+		Ac3H11_2779	0.54	-0.0
1,082,133	+		Ac3H11_2779	0.54	+2.2
1,082,133	+		Ac3H11_2779	0.54	-0.8
1,082,134	-		Ac3H11_2779	0.54	+0.2
1,082,134	-		Ac3H11_2779	0.54	-0.4
1,082,188	+		Ac3H11_2779	0.58	-0.5
1,082,188	+		Ac3H11_2779	0.58	-1.0
1,082,419	-		Ac3H11_2779	0.75	-0.9
1,082,430	+		Ac3H11_2779	0.76	+0.9
1,082,431	-		Ac3H11_2779	0.76	-1.3
1,082,431	-		Ac3H11_2779	0.76	-1.0
1,082,442	+		Ac3H11_2779	0.77	-1.0
1,082,604	+		Ac3H11_2779	0.89	-0.6
1,082,791	+				-0.9
1,082,791	+				+0.1
1,082,791	+				-0.4
1,082,792	-				-1.2
1,082,792	-				-0.4
1,082,792	-				-0.8
1,082,792	-				-1.1
1,082,792	-				-0.1
1,082,792	-				+1.5
1,082,792	-				+0.4
1,082,792	-				-0.8
1,082,793	+				-1.0
1,082,793	+				-1.9
1,082,794	-				+0.6
1,082,794	-				-1.8
1,082,880	+				-0.5
1,082,880	+				+0.6
1,082,880	+				+0.2
1,082,881	-				+0.5
1,082,881	-				-1.6
1,082,907	+				+2.0
1,082,937	+				-1.4
1,082,937	+				+0.0
1,083,018	+		Ac3H11_2780	0.14	+0.3
1,083,018	+		Ac3H11_2780	0.14	-2.1
1,083,019	-		Ac3H11_2780	0.14	+1.3
1,083,070	-		Ac3H11_2780	0.17	+1.2
1,083,102	+		Ac3H11_2780	0.19	+0.5
1,083,102	+		Ac3H11_2780	0.19	-0.4
1,083,102	+		Ac3H11_2780	0.19	+0.1
1,083,183	+		Ac3H11_2780	0.24	-2.3
1,083,198	+		Ac3H11_2780	0.25	+0.5
1,083,198	+		Ac3H11_2780	0.25	-0.1
1,083,199	-		Ac3H11_2780	0.25	+2.5
1,083,237	+		Ac3H11_2780	0.27	+0.6
1,083,238	-		Ac3H11_2780	0.27	-0.1
1,083,295	-		Ac3H11_2780	0.31	-0.5
1,083,354	+		Ac3H11_2780	0.34	+0.8
1,083,354	+		Ac3H11_2780	0.34	-1.0
1,083,354	+		Ac3H11_2780	0.34	-0.5
1,083,355	-		Ac3H11_2780	0.34	-1.4
1,083,457	+		Ac3H11_2780	0.40	+0.5
1,083,516	+		Ac3H11_2780	0.44	+0.4
1,083,516	+		Ac3H11_2780	0.44	+0.2
1,083,516	+		Ac3H11_2780	0.44	-1.0
1,083,517	-		Ac3H11_2780	0.44	-1.8
1,083,517	-		Ac3H11_2780	0.44	+0.2
1,083,571	+		Ac3H11_2780	0.47	+0.2
1,083,588	+		Ac3H11_2780	0.48	+1.3
1,083,591	+		Ac3H11_2780	0.48	-1.2
1,083,592	-		Ac3H11_2780	0.48	+0.9
1,083,592	-		Ac3H11_2780	0.48	-1.0
1,083,699	+		Ac3H11_2780	0.54	-0.9
1,083,699	+		Ac3H11_2780	0.54	-0.0
1,083,774	+		Ac3H11_2780	0.59	-0.6
1,083,775	-		Ac3H11_2780	0.59	+0.9
1,083,819	+		Ac3H11_2780	0.61	+0.1
1,083,820	-		Ac3H11_2780	0.61	-1.5
1,083,820	-		Ac3H11_2780	0.61	-0.2
1,083,951	+		Ac3H11_2780	0.69	-0.3
1,084,131	+		Ac3H11_2780	0.80	+0.6
1,084,131	+		Ac3H11_2780	0.80	+0.5
1,084,131	+		Ac3H11_2780	0.80	-0.7
1,084,132	-		Ac3H11_2780	0.80	-0.3
1,084,132	-		Ac3H11_2780	0.80	+0.2
1,084,132	-		Ac3H11_2780	0.80	-1.7
1,084,132	-		Ac3H11_2780	0.80	-0.4
1,084,176	+		Ac3H11_2780	0.82	-0.8
1,084,188	+		Ac3H11_2780	0.83	-0.6
1,084,188	+		Ac3H11_2780	0.83	+2.5
1,084,230	+		Ac3H11_2780	0.86	-1.5
1,084,230	+		Ac3H11_2780	0.86	-0.4
1,084,230	+		Ac3H11_2780	0.86	+0.0
1,084,231	-		Ac3H11_2780	0.86	-1.6
1,084,231	-		Ac3H11_2780	0.86	+1.0
1,084,231	-		Ac3H11_2780	0.86	+0.4
1,084,235	-		Ac3H11_2780	0.86	-0.1
1,084,235	-		Ac3H11_2780	0.86	-0.1
1,084,264	+		Ac3H11_2780	0.88	-0.6
1,084,264	+		Ac3H11_2780	0.88	-0.2
1,084,265	-		Ac3H11_2780	0.88	+1.0
1,084,276	+		Ac3H11_2780	0.88	+0.0
1,084,277	-		Ac3H11_2780	0.88	-1.1
1,084,277	-		Ac3H11_2780	0.88	-2.1
1,084,277	-		Ac3H11_2780	0.88	+1.5
1,084,277	-		Ac3H11_2780	0.88	-0.2
1,084,294	+		Ac3H11_2780	0.89	+0.6
1,084,294	+		Ac3H11_2780	0.89	-1.4
1,084,295	-		Ac3H11_2780	0.89	+0.2
1,084,295	-		Ac3H11_2780	0.89	+1.9
1,084,549	+				+2.0
1,084,549	+				+1.0
1,084,549	+				-0.7
1,084,550	-				-0.1
1,084,550	-				-1.3
1,084,556	+				-1.2
1,084,557	-				+0.3
1,084,557	-				-0.1
1,084,557	-				-1.2
1,084,557	-				-0.4
1,084,557	-				+0.6
1,084,849	+				-3.1
1,084,849	+				+0.2
1,084,849	+				+0.7
1,084,849	+				+1.2
1,084,850	-				+2.2
1,084,850	-				+1.8
1,084,850	-				-0.7
1,084,973	+				+0.7
1,085,001	+				+1.5
1,085,001	+				+0.6
1,085,001	+				+0.7
1,085,002	-				-0.3
1,085,002	-				-1.6
1,085,007	+				-1.0
1,085,008	-				+1.5
1,085,180	+				+0.2
1,085,180	+				-0.0
1,085,181	-				-1.6
1,085,181	-				-1.3
1,085,425	+				+0.7
1,085,425	+				-0.1
1,085,426	-				+0.7
1,085,426	-				+0.9