Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2739

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2737 and Ac3H11_2738 are separated by 4 nucleotidesAc3H11_2738 and Ac3H11_2739 overlap by 4 nucleotidesAc3H11_2739 and Ac3H11_2740 overlap by 4 nucleotides Ac3H11_2737 - putative inner membrane efflux protein, at 1,036,967 to 1,038,145 _2737 Ac3H11_2738 - Glutathione peroxidase family protein, at 1,038,150 to 1,038,698 _2738 Ac3H11_2739 - FIG00481831: hypothetical protein, at 1,038,695 to 1,039,228 _2739 Ac3H11_2740 - 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9), at 1,039,225 to 1,040,109 _2740 Position (kb) 1038 1039 1040Strain fitness (log2 ratio) -1 0 1 2at 1038.377 kb on - strand, within Ac3H11_2738at 1038.571 kb on + strand, within Ac3H11_2738at 1038.704 kb on + strandat 1038.705 kb on - strandat 1038.715 kb on - strandat 1038.868 kb on - strand, within Ac3H11_2739at 1039.289 kb on + strandat 1039.289 kb on + strandat 1039.290 kb on - strandat 1040.179 kb on + strandat 1040.200 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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1,038,377 - Ac3H11_2738 0.41 -0.7
1,038,571 + Ac3H11_2738 0.77 -0.5
1,038,704 + +0.3
1,038,705 - -0.8
1,038,715 - -0.6
1,038,868 - Ac3H11_2739 0.32 +2.4
1,039,289 + -1.6
1,039,289 + -0.5
1,039,290 - +0.6
1,040,179 + +1.9
1,040,200 - +0.8

Or see this region's nucleotide sequence