Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2596

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2595 and Ac3H11_2596 are separated by 50 nucleotidesAc3H11_2596 and Ac3H11_2597 are separated by 219 nucleotides Ac3H11_2595 - extensin-like protein, at 875,994 to 876,953 _2595 Ac3H11_2596 - hypothetical protein, at 877,004 to 878,287 _2596 Ac3H11_2597 - putative inner membrane efflux protein, at 878,507 to 879,706 _2597 Position (kb) 877 878 879Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 876.031 kb on - strandat 876.032 kb on + strandat 876.032 kb on + strandat 876.099 kb on - strand, within Ac3H11_2595at 876.137 kb on + strand, within Ac3H11_2595at 876.137 kb on + strand, within Ac3H11_2595at 876.137 kb on + strand, within Ac3H11_2595at 876.137 kb on + strand, within Ac3H11_2595at 876.138 kb on - strand, within Ac3H11_2595at 876.138 kb on - strand, within Ac3H11_2595at 876.138 kb on - strand, within Ac3H11_2595at 876.181 kb on + strand, within Ac3H11_2595at 876.181 kb on + strand, within Ac3H11_2595at 876.181 kb on + strand, within Ac3H11_2595at 876.181 kb on + strand, within Ac3H11_2595at 876.182 kb on - strand, within Ac3H11_2595at 876.264 kb on + strand, within Ac3H11_2595at 876.289 kb on + strand, within Ac3H11_2595at 876.289 kb on + strand, within Ac3H11_2595at 876.289 kb on + strand, within Ac3H11_2595at 876.289 kb on + strand, within Ac3H11_2595at 876.290 kb on - strand, within Ac3H11_2595at 876.290 kb on - strand, within Ac3H11_2595at 876.385 kb on + strand, within Ac3H11_2595at 876.385 kb on + strand, within Ac3H11_2595at 876.386 kb on - strand, within Ac3H11_2595at 876.386 kb on - strand, within Ac3H11_2595at 876.386 kb on - strand, within Ac3H11_2595at 876.386 kb on - strand, within Ac3H11_2595at 876.386 kb on - strand, within Ac3H11_2595at 876.574 kb on + strand, within Ac3H11_2595at 876.574 kb on + strand, within Ac3H11_2595at 876.574 kb on + strand, within Ac3H11_2595at 876.574 kb on + strand, within Ac3H11_2595at 876.574 kb on + strand, within Ac3H11_2595at 876.575 kb on - strand, within Ac3H11_2595at 876.575 kb on - strand, within Ac3H11_2595at 876.575 kb on - strand, within Ac3H11_2595at 876.575 kb on - strand, within Ac3H11_2595at 876.679 kb on + strand, within Ac3H11_2595at 876.680 kb on - strand, within Ac3H11_2595at 876.710 kb on - strand, within Ac3H11_2595at 876.735 kb on - strand, within Ac3H11_2595at 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.953 kb on + strandat 876.954 kb on - strandat 876.954 kb on - strandat 876.954 kb on - strandat 876.954 kb on - strandat 877.047 kb on + strandat 877.048 kb on - strandat 877.048 kb on - strandat 877.198 kb on - strand, within Ac3H11_2596at 877.335 kb on + strand, within Ac3H11_2596at 877.335 kb on + strand, within Ac3H11_2596at 877.335 kb on + strand, within Ac3H11_2596at 877.335 kb on + strand, within Ac3H11_2596at 877.335 kb on + strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.336 kb on - strand, within Ac3H11_2596at 877.347 kb on + strand, within Ac3H11_2596at 877.380 kb on + strand, within Ac3H11_2596at 877.380 kb on + strand, within Ac3H11_2596at 877.381 kb on - strand, within Ac3H11_2596at 877.381 kb on - strand, within Ac3H11_2596at 877.489 kb on - strand, within Ac3H11_2596at 877.545 kb on + strand, within Ac3H11_2596at 877.545 kb on + strand, within Ac3H11_2596at 877.545 kb on + strand, within Ac3H11_2596at 877.546 kb on - strand, within Ac3H11_2596at 877.546 kb on - strand, within Ac3H11_2596at 877.546 kb on - strand, within Ac3H11_2596at 877.548 kb on + strand, within Ac3H11_2596at 877.549 kb on - strand, within Ac3H11_2596at 877.549 kb on - strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.743 kb on + strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.744 kb on - strand, within Ac3H11_2596at 877.872 kb on + strand, within Ac3H11_2596at 877.873 kb on - strand, within Ac3H11_2596at 877.873 kb on - strand, within Ac3H11_2596at 877.873 kb on - strand, within Ac3H11_2596at 877.873 kb on - strand, within Ac3H11_2596at 877.873 kb on - strand, within Ac3H11_2596at 877.914 kb on + strand, within Ac3H11_2596at 877.914 kb on + strand, within Ac3H11_2596at 877.915 kb on - strand, within Ac3H11_2596at 877.915 kb on - strand, within Ac3H11_2596at 877.921 kb on - strand, within Ac3H11_2596at 877.921 kb on - strand, within Ac3H11_2596at 877.921 kb on - strand, within Ac3H11_2596at 878.106 kb on + strand, within Ac3H11_2596at 878.106 kb on + strand, within Ac3H11_2596at 878.106 kb on + strand, within Ac3H11_2596at 878.106 kb on + strand, within Ac3H11_2596at 878.107 kb on - strand, within Ac3H11_2596at 878.107 kb on - strand, within Ac3H11_2596at 878.107 kb on - strand, within Ac3H11_2596at 878.337 kb on + strandat 878.337 kb on + strandat 878.337 kb on + strandat 878.338 kb on - strandat 878.432 kb on + strandat 878.432 kb on + strandat 878.432 kb on + strandat 878.433 kb on - strandat 878.433 kb on - strandat 878.433 kb on - strandat 878.433 kb on - strandat 878.433 kb on - strandat 878.433 kb on - strandat 878.433 kb on - strandat 878.499 kb on - strandat 878.508 kb on + strandat 878.509 kb on - strandat 878.540 kb on - strandat 878.540 kb on - strandat 878.821 kb on - strand, within Ac3H11_2597at 878.947 kb on + strand, within Ac3H11_2597at 878.948 kb on - strand, within Ac3H11_2597at 878.948 kb on - strand, within Ac3H11_2597

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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876,031 - -0.8
876,032 + +1.9
876,032 + -0.6
876,099 - Ac3H11_2595 0.11 +0.9
876,137 + Ac3H11_2595 0.15 -1.8
876,137 + Ac3H11_2595 0.15 +1.8
876,137 + Ac3H11_2595 0.15 +1.3
876,137 + Ac3H11_2595 0.15 -0.7
876,138 - Ac3H11_2595 0.15 -0.5
876,138 - Ac3H11_2595 0.15 +1.1
876,138 - Ac3H11_2595 0.15 -0.5
876,181 + Ac3H11_2595 0.19 -1.7
876,181 + Ac3H11_2595 0.19 -1.0
876,181 + Ac3H11_2595 0.19 -0.4
876,181 + Ac3H11_2595 0.19 -1.7
876,182 - Ac3H11_2595 0.20 -0.8
876,264 + Ac3H11_2595 0.28 +0.8
876,289 + Ac3H11_2595 0.31 +1.3
876,289 + Ac3H11_2595 0.31 -0.7
876,289 + Ac3H11_2595 0.31 -0.3
876,289 + Ac3H11_2595 0.31 +2.7
876,290 - Ac3H11_2595 0.31 +0.7
876,290 - Ac3H11_2595 0.31 -1.4
876,385 + Ac3H11_2595 0.41 +1.5
876,385 + Ac3H11_2595 0.41 -0.6
876,386 - Ac3H11_2595 0.41 -1.5
876,386 - Ac3H11_2595 0.41 -0.3
876,386 - Ac3H11_2595 0.41 -1.0
876,386 - Ac3H11_2595 0.41 -1.4
876,386 - Ac3H11_2595 0.41 -0.1
876,574 + Ac3H11_2595 0.60 +0.2
876,574 + Ac3H11_2595 0.60 -1.1
876,574 + Ac3H11_2595 0.60 +0.4
876,574 + Ac3H11_2595 0.60 +0.4
876,574 + Ac3H11_2595 0.60 +0.4
876,575 - Ac3H11_2595 0.61 -1.0
876,575 - Ac3H11_2595 0.61 +0.3
876,575 - Ac3H11_2595 0.61 +0.9
876,575 - Ac3H11_2595 0.61 +0.2
876,679 + Ac3H11_2595 0.71 -1.1
876,680 - Ac3H11_2595 0.71 -0.5
876,710 - Ac3H11_2595 0.75 -0.7
876,735 - Ac3H11_2595 0.77 +0.8
876,953 + +1.4
876,953 + -0.2
876,953 + -0.3
876,953 + -0.3
876,953 + -1.7
876,953 + -0.4
876,953 + -0.6
876,953 + +0.3
876,953 + +1.8
876,953 + +0.3
876,954 - +0.5
876,954 - +0.2
876,954 - -3.0
876,954 - +0.4
877,047 + +0.0
877,048 - -0.6
877,048 - -0.6
877,198 - Ac3H11_2596 0.15 +0.4
877,335 + Ac3H11_2596 0.26 -0.4
877,335 + Ac3H11_2596 0.26 -1.2
877,335 + Ac3H11_2596 0.26 +1.0
877,335 + Ac3H11_2596 0.26 +1.8
877,335 + Ac3H11_2596 0.26 -2.0
877,336 - Ac3H11_2596 0.26 -1.3
877,336 - Ac3H11_2596 0.26 -2.6
877,336 - Ac3H11_2596 0.26 -0.7
877,336 - Ac3H11_2596 0.26 -2.4
877,336 - Ac3H11_2596 0.26 +2.4
877,336 - Ac3H11_2596 0.26 +0.8
877,336 - Ac3H11_2596 0.26 -0.4
877,336 - Ac3H11_2596 0.26 +1.0
877,336 - Ac3H11_2596 0.26 -1.6
877,347 + Ac3H11_2596 0.27 +0.6
877,380 + Ac3H11_2596 0.29 -0.8
877,380 + Ac3H11_2596 0.29 +0.8
877,381 - Ac3H11_2596 0.29 +0.9
877,381 - Ac3H11_2596 0.29 +0.4
877,489 - Ac3H11_2596 0.38 +0.6
877,545 + Ac3H11_2596 0.42 -1.4
877,545 + Ac3H11_2596 0.42 +0.4
877,545 + Ac3H11_2596 0.42 -0.8
877,546 - Ac3H11_2596 0.42 +2.0
877,546 - Ac3H11_2596 0.42 -1.7
877,546 - Ac3H11_2596 0.42 -1.5
877,548 + Ac3H11_2596 0.42 -0.3
877,549 - Ac3H11_2596 0.42 -0.2
877,549 - Ac3H11_2596 0.42 -0.1
877,743 + Ac3H11_2596 0.58 -1.5
877,743 + Ac3H11_2596 0.58 -2.3
877,743 + Ac3H11_2596 0.58 -1.2
877,743 + Ac3H11_2596 0.58 -1.2
877,743 + Ac3H11_2596 0.58 -2.9
877,743 + Ac3H11_2596 0.58 -0.8
877,743 + Ac3H11_2596 0.58 -0.4
877,743 + Ac3H11_2596 0.58 +0.8
877,743 + Ac3H11_2596 0.58 +0.1
877,743 + Ac3H11_2596 0.58 -0.1
877,743 + Ac3H11_2596 0.58 -3.0
877,743 + Ac3H11_2596 0.58 -0.3
877,743 + Ac3H11_2596 0.58 +0.2
877,743 + Ac3H11_2596 0.58 -1.2
877,743 + Ac3H11_2596 0.58 +1.3
877,743 + Ac3H11_2596 0.58 -0.8
877,744 - Ac3H11_2596 0.58 +3.1
877,744 - Ac3H11_2596 0.58 -0.8
877,744 - Ac3H11_2596 0.58 +2.4
877,744 - Ac3H11_2596 0.58 +0.1
877,744 - Ac3H11_2596 0.58 +0.2
877,744 - Ac3H11_2596 0.58 -0.2
877,744 - Ac3H11_2596 0.58 -0.3
877,744 - Ac3H11_2596 0.58 +0.5
877,744 - Ac3H11_2596 0.58 -1.5
877,744 - Ac3H11_2596 0.58 +1.0
877,744 - Ac3H11_2596 0.58 +0.1
877,872 + Ac3H11_2596 0.68 -0.1
877,873 - Ac3H11_2596 0.68 -0.1
877,873 - Ac3H11_2596 0.68 +0.7
877,873 - Ac3H11_2596 0.68 +0.5
877,873 - Ac3H11_2596 0.68 +0.1
877,873 - Ac3H11_2596 0.68 -0.2
877,914 + Ac3H11_2596 0.71 +0.0
877,914 + Ac3H11_2596 0.71 -0.9
877,915 - Ac3H11_2596 0.71 +2.0
877,915 - Ac3H11_2596 0.71 -2.3
877,921 - Ac3H11_2596 0.71 -0.3
877,921 - Ac3H11_2596 0.71 -0.1
877,921 - Ac3H11_2596 0.71 -1.3
878,106 + Ac3H11_2596 0.86 -1.6
878,106 + Ac3H11_2596 0.86 +2.2
878,106 + Ac3H11_2596 0.86 -1.0
878,106 + Ac3H11_2596 0.86 +0.1
878,107 - Ac3H11_2596 0.86 +0.8
878,107 - Ac3H11_2596 0.86 -0.9
878,107 - Ac3H11_2596 0.86 +1.4
878,337 + +2.4
878,337 + +0.4
878,337 + -0.2
878,338 - +0.4
878,432 + +0.3
878,432 + +1.4
878,432 + -0.7
878,433 - +0.2
878,433 - -0.1
878,433 - -1.4
878,433 - -0.3
878,433 - +0.6
878,433 - -1.8
878,433 - -1.8
878,499 - -0.4
878,508 + +0.4
878,509 - -0.4
878,540 - +0.1
878,540 - +0.8
878,821 - Ac3H11_2597 0.26 -1.6
878,947 + Ac3H11_2597 0.37 -0.0
878,948 - Ac3H11_2597 0.37 -1.0
878,948 - Ac3H11_2597 0.37 +3.0

Or see this region's nucleotide sequence