Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2432

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2431 and Ac3H11_2432 are separated by 24 nucleotidesAc3H11_2432 and Ac3H11_2433 are separated by 114 nucleotides Ac3H11_2431 - ABC transporter ATP-binding protein, at 690,011 to 691,555 _2431 Ac3H11_2432 - Nucleoside ABC transporter, permease protein 1, at 691,580 to 692,641 _2432 Ac3H11_2433 - Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1), at 692,756 to 693,679 _2433 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.912 kb on + strand, within Ac3H11_2431at 690.912 kb on + strand, within Ac3H11_2431at 690.912 kb on + strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 690.913 kb on - strand, within Ac3H11_2431at 691.619 kb on + strandat 691.619 kb on + strandat 691.619 kb on + strandat 691.620 kb on - strandat 691.620 kb on - strandat 691.620 kb on - strandat 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.709 kb on + strand, within Ac3H11_2432at 691.710 kb on - strand, within Ac3H11_2432at 691.710 kb on - strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.856 kb on + strand, within Ac3H11_2432at 691.857 kb on - strand, within Ac3H11_2432at 691.857 kb on - strand, within Ac3H11_2432at 691.891 kb on + strand, within Ac3H11_2432at 691.891 kb on + strand, within Ac3H11_2432at 691.925 kb on + strand, within Ac3H11_2432at 691.925 kb on + strand, within Ac3H11_2432at 691.926 kb on - strand, within Ac3H11_2432at 692.397 kb on - strand, within Ac3H11_2432at 692.429 kb on + strand, within Ac3H11_2432at 692.429 kb on + strand, within Ac3H11_2432at 692.429 kb on + strand, within Ac3H11_2432at 692.555 kb on + strandat 692.555 kb on + strandat 692.555 kb on + strandat 692.555 kb on + strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.556 kb on - strandat 692.716 kb on + strandat 692.717 kb on - strandat 692.717 kb on - strandat 692.933 kb on + strand, within Ac3H11_2433at 692.933 kb on + strand, within Ac3H11_2433at 692.933 kb on + strand, within Ac3H11_2433at 692.934 kb on - strand, within Ac3H11_2433at 692.934 kb on - strand, within Ac3H11_2433at 692.934 kb on - strand, within Ac3H11_2433at 692.934 kb on - strand, within Ac3H11_2433at 693.083 kb on + strand, within Ac3H11_2433at 693.083 kb on + strand, within Ac3H11_2433at 693.083 kb on + strand, within Ac3H11_2433at 693.083 kb on + strand, within Ac3H11_2433at 693.083 kb on + strand, within Ac3H11_2433at 693.084 kb on - strand, within Ac3H11_2433at 693.084 kb on - strand, within Ac3H11_2433at 693.086 kb on + strand, within Ac3H11_2433at 693.086 kb on + strand, within Ac3H11_2433at 693.087 kb on - strand, within Ac3H11_2433at 693.087 kb on - strand, within Ac3H11_2433at 693.170 kb on - strand, within Ac3H11_2433at 693.340 kb on - strand, within Ac3H11_2433at 693.340 kb on - strand, within Ac3H11_2433at 693.573 kb on - strand, within Ac3H11_2433at 693.573 kb on - strand, within Ac3H11_2433at 693.587 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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690,912 + Ac3H11_2431 0.58 -0.8
690,912 + Ac3H11_2431 0.58 -1.3
690,912 + Ac3H11_2431 0.58 +0.0
690,913 - Ac3H11_2431 0.58 -1.3
690,913 - Ac3H11_2431 0.58 +0.1
690,913 - Ac3H11_2431 0.58 +0.4
690,913 - Ac3H11_2431 0.58 -0.6
690,913 - Ac3H11_2431 0.58 +1.2
690,913 - Ac3H11_2431 0.58 +2.4
690,913 - Ac3H11_2431 0.58 -0.4
691,619 + +0.4
691,619 + -0.5
691,619 + +1.8
691,620 - +0.9
691,620 - +0.1
691,620 - +0.7
691,709 + Ac3H11_2432 0.12 -0.7
691,709 + Ac3H11_2432 0.12 +0.7
691,709 + Ac3H11_2432 0.12 +0.4
691,709 + Ac3H11_2432 0.12 -1.5
691,709 + Ac3H11_2432 0.12 -0.5
691,709 + Ac3H11_2432 0.12 -0.2
691,709 + Ac3H11_2432 0.12 -0.6
691,709 + Ac3H11_2432 0.12 -1.2
691,710 - Ac3H11_2432 0.12 -1.1
691,710 - Ac3H11_2432 0.12 +1.1
691,856 + Ac3H11_2432 0.26 +1.2
691,856 + Ac3H11_2432 0.26 +2.4
691,856 + Ac3H11_2432 0.26 +0.0
691,856 + Ac3H11_2432 0.26 -0.8
691,856 + Ac3H11_2432 0.26 +0.4
691,857 - Ac3H11_2432 0.26 +1.2
691,857 - Ac3H11_2432 0.26 -1.8
691,891 + Ac3H11_2432 0.29 +0.7
691,891 + Ac3H11_2432 0.29 +0.8
691,925 + Ac3H11_2432 0.32 -1.6
691,925 + Ac3H11_2432 0.32 +0.7
691,926 - Ac3H11_2432 0.33 -1.2
692,397 - Ac3H11_2432 0.77 -0.8
692,429 + Ac3H11_2432 0.80 -0.5
692,429 + Ac3H11_2432 0.80 +0.4
692,429 + Ac3H11_2432 0.80 -1.2
692,555 + +0.4
692,555 + +1.2
692,555 + -0.3
692,555 + -1.1
692,556 - -1.0
692,556 - -0.6
692,556 - +1.0
692,556 - +1.1
692,556 - +1.6
692,556 - -1.2
692,556 - +0.2
692,556 - +0.1
692,556 - -0.0
692,556 - +0.7
692,716 + -0.3
692,717 - +0.8
692,717 - -0.6
692,933 + Ac3H11_2433 0.19 +2.7
692,933 + Ac3H11_2433 0.19 +0.2
692,933 + Ac3H11_2433 0.19 -0.1
692,934 - Ac3H11_2433 0.19 +0.5
692,934 - Ac3H11_2433 0.19 +1.0
692,934 - Ac3H11_2433 0.19 +0.1
692,934 - Ac3H11_2433 0.19 -0.6
693,083 + Ac3H11_2433 0.35 +0.4
693,083 + Ac3H11_2433 0.35 -3.3
693,083 + Ac3H11_2433 0.35 -0.8
693,083 + Ac3H11_2433 0.35 +0.8
693,083 + Ac3H11_2433 0.35 -1.1
693,084 - Ac3H11_2433 0.35 +0.0
693,084 - Ac3H11_2433 0.35 +1.2
693,086 + Ac3H11_2433 0.36 -0.2
693,086 + Ac3H11_2433 0.36 -1.4
693,087 - Ac3H11_2433 0.36 +0.1
693,087 - Ac3H11_2433 0.36 -0.3
693,170 - Ac3H11_2433 0.45 -0.2
693,340 - Ac3H11_2433 0.63 +0.1
693,340 - Ac3H11_2433 0.63 +2.2
693,573 - Ac3H11_2433 0.88 -1.7
693,573 - Ac3H11_2433 0.88 -0.9
693,587 + +1.1

Or see this region's nucleotide sequence