Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2360 and Ac3H11_2361 are separated by 207 nucleotides Ac3H11_2361 and Ac3H11_2362 are separated by 118 nucleotides
Ac3H11_2360 - Mlr7906 protein, at 617,612 to 618,082
_2360
Ac3H11_2361 - hypothetical protein, at 618,290 to 618,625
_2361
Ac3H11_2362 - 3-hydroxyisobutyrate dehydrogenase (EC 1.1.1.31), at 618,744 to 619,628
_2362
Position (kb) 618
619
620 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 617.805 kb on + strand, within Ac3H11_2360 at 617.805 kb on + strand, within Ac3H11_2360 at 617.806 kb on - strand, within Ac3H11_2360 at 617.806 kb on - strand, within Ac3H11_2360 at 617.806 kb on - strand, within Ac3H11_2360 at 617.858 kb on + strand, within Ac3H11_2360 at 617.858 kb on + strand, within Ac3H11_2360 at 617.859 kb on - strand, within Ac3H11_2360 at 617.906 kb on + strand, within Ac3H11_2360 at 617.906 kb on + strand, within Ac3H11_2360 at 617.907 kb on - strand, within Ac3H11_2360 at 617.930 kb on + strand, within Ac3H11_2360 at 617.930 kb on + strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 617.931 kb on - strand, within Ac3H11_2360 at 618.083 kb on + strand at 618.083 kb on + strand at 618.084 kb on - strand at 618.084 kb on - strand at 618.104 kb on - strand at 618.104 kb on - strand at 618.194 kb on + strand at 618.194 kb on + strand at 618.232 kb on - strand at 618.232 kb on - strand at 618.237 kb on + strand at 618.237 kb on + strand at 618.237 kb on + strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.238 kb on - strand at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.344 kb on + strand, within Ac3H11_2361 at 618.345 kb on - strand, within Ac3H11_2361 at 618.357 kb on - strand, within Ac3H11_2361 at 618.545 kb on + strand, within Ac3H11_2361 at 618.545 kb on + strand, within Ac3H11_2361 at 618.546 kb on - strand, within Ac3H11_2361 at 618.690 kb on - strand at 619.040 kb on + strand, within Ac3H11_2362 at 619.041 kb on - strand, within Ac3H11_2362 at 619.041 kb on - strand, within Ac3H11_2362 at 619.041 kb on - strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.395 kb on + strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.396 kb on - strand, within Ac3H11_2362 at 619.483 kb on + strand, within Ac3H11_2362 at 619.484 kb on - strand, within Ac3H11_2362 at 619.484 kb on - strand, within Ac3H11_2362 at 619.555 kb on - strand at 619.555 kb on - strand at 619.555 kb on - strand at 619.605 kb on - strand at 619.786 kb on + strand at 619.797 kb on + strand at 619.797 kb on + strand at 619.797 kb on + strand at 619.797 kb on + strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.798 kb on - strand at 619.873 kb on - strand at 620.104 kb on + strand at 620.104 kb on + strand at 620.104 kb on + strand at 620.105 kb on - strand at 620.105 kb on - strand at 620.126 kb on - strand at 620.197 kb on - strand at 620.197 kb on - strand at 620.203 kb on + strand at 620.203 kb on + strand at 620.203 kb on + strand at 620.204 kb on - strand at 620.204 kb on - strand at 620.223 kb on - strand at 620.223 kb on - strand at 620.224 kb on + strand at 620.224 kb on + strand at 620.224 kb on + strand at 620.225 kb on - strand at 620.225 kb on - strand at 620.227 kb on + strand at 620.227 kb on + strand at 620.227 kb on + strand at 620.227 kb on + strand at 620.228 kb on - strand at 620.228 kb on - strand at 620.228 kb on - strand at 620.228 kb on - strand at 620.231 kb on + strand at 620.232 kb on - strand at 620.232 kb on - strand at 620.266 kb on + strand at 620.266 kb on + strand at 620.266 kb on + strand at 620.267 kb on - strand at 620.267 kb on - strand at 620.267 kb on - strand at 620.267 kb on - strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.274 kb on + strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.275 kb on - strand at 620.277 kb on + strand at 620.277 kb on + strand at 620.277 kb on + strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.278 kb on - strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.295 kb on + strand at 620.296 kb on - strand at 620.296 kb on - strand at 620.296 kb on - strand at 620.296 kb on - strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.324 kb on + strand at 620.325 kb on + strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.325 kb on - strand at 620.362 kb on + strand at 620.362 kb on + strand at 620.363 kb on - strand at 620.363 kb on - strand at 620.363 kb on - strand at 620.381 kb on + strand at 620.381 kb on + strand at 620.382 kb on - strand at 620.382 kb on - strand at 620.382 kb on - strand at 620.382 kb on - strand at 620.535 kb on + strand at 620.535 kb on + strand at 620.565 kb on - strand at 620.575 kb on + strand at 620.575 kb on + strand at 620.576 kb on - strand at 620.576 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 617,805 + Ac3H11_2360 0.41 -0.0 617,805 + Ac3H11_2360 0.41 -0.5 617,806 - Ac3H11_2360 0.41 -0.7 617,806 - Ac3H11_2360 0.41 +2.4 617,806 - Ac3H11_2360 0.41 -0.6 617,858 + Ac3H11_2360 0.52 +0.1 617,858 + Ac3H11_2360 0.52 -1.4 617,859 - Ac3H11_2360 0.52 -1.3 617,906 + Ac3H11_2360 0.62 +0.8 617,906 + Ac3H11_2360 0.62 -1.9 617,907 - Ac3H11_2360 0.63 +0.4 617,930 + Ac3H11_2360 0.68 -1.0 617,930 + Ac3H11_2360 0.68 -1.1 617,931 - Ac3H11_2360 0.68 -0.2 617,931 - Ac3H11_2360 0.68 +1.1 617,931 - Ac3H11_2360 0.68 -0.8 617,931 - Ac3H11_2360 0.68 -1.0 618,083 + -0.3 618,083 + +0.4 618,084 - -0.3 618,084 - -0.1 618,104 - -1.6 618,104 - +2.4 618,194 + -0.5 618,194 + -0.3 618,232 - -1.7 618,232 - +0.1 618,237 + -0.3 618,237 + +0.2 618,237 + -0.8 618,238 - -0.4 618,238 - -0.2 618,238 - -1.6 618,238 - -0.9 618,238 - -0.6 618,238 - -1.1 618,344 + Ac3H11_2361 0.16 +0.0 618,344 + Ac3H11_2361 0.16 +0.6 618,344 + Ac3H11_2361 0.16 +0.9 618,344 + Ac3H11_2361 0.16 +0.0 618,344 + Ac3H11_2361 0.16 -0.9 618,344 + Ac3H11_2361 0.16 -0.3 618,344 + Ac3H11_2361 0.16 -2.2 618,344 + Ac3H11_2361 0.16 +1.1 618,344 + Ac3H11_2361 0.16 -0.9 618,345 - Ac3H11_2361 0.16 +0.8 618,357 - Ac3H11_2361 0.20 -0.5 618,545 + Ac3H11_2361 0.76 +1.3 618,545 + Ac3H11_2361 0.76 +1.9 618,546 - Ac3H11_2361 0.76 +0.4 618,690 - +0.1 619,040 + Ac3H11_2362 0.33 -0.7 619,041 - Ac3H11_2362 0.34 -0.8 619,041 - Ac3H11_2362 0.34 -2.5 619,041 - Ac3H11_2362 0.34 +0.1 619,395 + Ac3H11_2362 0.74 -0.2 619,395 + Ac3H11_2362 0.74 +0.2 619,395 + Ac3H11_2362 0.74 -0.3 619,395 + Ac3H11_2362 0.74 +0.1 619,396 - Ac3H11_2362 0.74 +0.3 619,396 - Ac3H11_2362 0.74 +1.1 619,396 - Ac3H11_2362 0.74 +1.1 619,396 - Ac3H11_2362 0.74 -0.2 619,396 - Ac3H11_2362 0.74 +0.4 619,396 - Ac3H11_2362 0.74 +0.1 619,396 - Ac3H11_2362 0.74 -0.6 619,396 - Ac3H11_2362 0.74 -1.3 619,483 + Ac3H11_2362 0.84 -0.6 619,484 - Ac3H11_2362 0.84 -0.2 619,484 - Ac3H11_2362 0.84 +0.0 619,555 - -1.4 619,555 - -1.5 619,555 - -1.2 619,605 - -1.4 619,786 + +0.5 619,797 + +1.1 619,797 + +0.4 619,797 + -0.7 619,797 + +1.3 619,798 - +0.7 619,798 - +0.0 619,798 - -0.5 619,798 - -1.7 619,798 - -0.1 619,798 - -1.1 619,798 - +0.5 619,798 - -3.1 619,798 - +1.1 619,873 - -0.7 620,104 + -0.3 620,104 + -2.0 620,104 + +0.1 620,105 - -0.1 620,105 - -0.6 620,126 - +0.2 620,197 - +2.7 620,197 - +1.7 620,203 + -0.5 620,203 + -1.3 620,203 + +1.0 620,204 - +0.4 620,204 - +1.6 620,223 - -0.2 620,223 - +0.0 620,224 + -2.2 620,224 + -0.8 620,224 + +1.4 620,225 - +0.8 620,225 - -1.2 620,227 + +0.4 620,227 + +1.0 620,227 + -0.5 620,227 + -0.1 620,228 - -1.9 620,228 - +0.5 620,228 - -0.2 620,228 - +1.0 620,231 + +0.2 620,232 - +1.7 620,232 - +1.5 620,266 + +0.1 620,266 + -0.2 620,266 + -0.6 620,267 - +0.3 620,267 - +6.1 620,267 - +2.1 620,267 - -1.2 620,274 + +1.4 620,274 + +1.3 620,274 + +0.8 620,274 + +0.1 620,274 + +1.4 620,274 + +2.4 620,274 + -0.8 620,274 + -1.6 620,275 - +1.5 620,275 - +0.4 620,275 - +0.9 620,275 - -0.8 620,275 - +0.3 620,275 - +2.0 620,275 - -0.3 620,275 - -0.3 620,277 + -1.9 620,277 + -0.3 620,277 + +1.4 620,278 - -0.2 620,278 - +1.0 620,278 - +0.5 620,278 - -1.6 620,278 - -0.0 620,295 + -1.6 620,295 + -0.7 620,295 + -1.4 620,295 + -1.1 620,295 + +0.5 620,296 - +0.4 620,296 - -2.2 620,296 - +0.1 620,296 - -0.3 620,324 + +1.4 620,324 + +0.2 620,324 + -0.0 620,324 + -0.8 620,324 + +0.9 620,324 + +0.8 620,324 + +0.6 620,324 + -1.2 620,324 + -1.6 620,324 + -0.1 620,324 + -2.1 620,324 + -0.0 620,324 + +0.5 620,324 + +2.0 620,324 + +0.1 620,325 + -0.2 620,325 - +1.9 620,325 - -0.8 620,325 - +0.4 620,325 - -1.4 620,325 - +0.8 620,325 - -1.8 620,325 - +0.2 620,325 - -1.9 620,325 - -1.1 620,325 - +0.4 620,325 - -0.7 620,325 - +0.1 620,325 - -0.9 620,325 - +1.6 620,325 - +0.8 620,325 - -0.2 620,325 - -1.9 620,325 - -1.0 620,362 + -0.9 620,362 + -0.6 620,363 - -1.1 620,363 - +0.3 620,363 - -1.3 620,381 + +0.6 620,381 + -2.3 620,382 - -1.4 620,382 - +1.2 620,382 - +0.5 620,382 - -0.2 620,535 + -0.2 620,535 + +1.4 620,565 - +0.4 620,575 + +0.8 620,575 + +0.4 620,576 - +0.1 620,576 - +0.8
Or see this region's nucleotide sequence