Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1825

Experiment: D-Cycloserine 0.05 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAc3H11_1823 and Ac3H11_1824 are separated by 23 nucleotidesAc3H11_1824 and Ac3H11_1825 overlap by 10 nucleotidesAc3H11_1825 and Ac3H11_1826 are separated by 3 nucleotidesAc3H11_1826 and Ac3H11_1827 are separated by 44 nucleotides Ac3H11_1823 - INTEGRAL MEMBRANE PROTEIN (Rhomboid family), at 26,319 to 26,792 _1823 Ac3H11_1824 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 26,816 to 27,577 _1824 Ac3H11_1825 - Uncharacterized protein conserved in bacteria, NMA0228-like, at 27,568 to 28,428 _1825 Ac3H11_1826 - Putative signal peptide protein, at 28,432 to 28,725 _1826 Ac3H11_1827 - RNA polymerase sigma-70 factor, ECF subfamily, at 28,770 to 29,570 _1827 Position (kb) 27 28 29Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.575 kb on + strand, within Ac3H11_1823at 26.576 kb on - strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.596 kb on + strand, within Ac3H11_1823at 26.597 kb on - strand, within Ac3H11_1823at 27.267 kb on + strand, within Ac3H11_1824at 27.267 kb on + strand, within Ac3H11_1824at 27.267 kb on + strand, within Ac3H11_1824at 27.268 kb on - strand, within Ac3H11_1824at 27.268 kb on - strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.324 kb on + strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.325 kb on - strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.366 kb on + strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.367 kb on - strand, within Ac3H11_1824at 27.423 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.463 kb on + strand, within Ac3H11_1824at 27.464 kb on - strand, within Ac3H11_1824at 27.464 kb on - strand, within Ac3H11_1824at 27.471 kb on + strand, within Ac3H11_1824at 27.471 kb on + strand, within Ac3H11_1824at 27.694 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.725 kb on + strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.726 kb on - strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.790 kb on + strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.791 kb on - strand, within Ac3H11_1825at 27.857 kb on + strand, within Ac3H11_1825at 27.857 kb on + strand, within Ac3H11_1825at 27.858 kb on - strand, within Ac3H11_1825at 27.995 kb on + strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 27.996 kb on - strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.319 kb on + strand, within Ac3H11_1825at 28.320 kb on - strand, within Ac3H11_1825at 28.320 kb on - strand, within Ac3H11_1825at 28.320 kb on - strand, within Ac3H11_1825at 28.379 kb on + strandat 28.526 kb on + strand, within Ac3H11_1826at 28.527 kb on - strand, within Ac3H11_1826at 28.527 kb on - strand, within Ac3H11_1826at 28.604 kb on + strand, within Ac3H11_1826at 28.604 kb on + strand, within Ac3H11_1826at 28.605 kb on - strand, within Ac3H11_1826at 28.605 kb on - strand, within Ac3H11_1826at 28.605 kb on - strand, within Ac3H11_1826at 28.605 kb on - strand, within Ac3H11_1826at 28.605 kb on - strand, within Ac3H11_1826at 28.728 kb on + strandat 28.728 kb on + strandat 28.729 kb on - strandat 28.811 kb on + strandat 28.811 kb on + strandat 28.811 kb on + strandat 28.812 kb on - strandat 28.812 kb on - strandat 28.922 kb on + strand, within Ac3H11_1827at 28.922 kb on + strand, within Ac3H11_1827at 28.923 kb on - strand, within Ac3H11_1827at 28.923 kb on - strand, within Ac3H11_1827at 28.923 kb on - strand, within Ac3H11_1827at 28.923 kb on - strand, within Ac3H11_1827at 28.923 kb on - strand, within Ac3H11_1827at 29.007 kb on + strand, within Ac3H11_1827at 29.008 kb on - strand, within Ac3H11_1827at 29.139 kb on + strand, within Ac3H11_1827at 29.139 kb on + strand, within Ac3H11_1827at 29.187 kb on + strand, within Ac3H11_1827at 29.188 kb on - strand, within Ac3H11_1827at 29.188 kb on - strand, within Ac3H11_1827at 29.358 kb on + strand, within Ac3H11_1827at 29.358 kb on + strand, within Ac3H11_1827at 29.358 kb on + strand, within Ac3H11_1827at 29.358 kb on + strand, within Ac3H11_1827at 29.359 kb on - strand, within Ac3H11_1827at 29.359 kb on - strand, within Ac3H11_1827at 29.359 kb on - strand, within Ac3H11_1827at 29.359 kb on - strand, within Ac3H11_1827

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
remove
26,575 + Ac3H11_1823 0.54 -2.1
26,575 + Ac3H11_1823 0.54 -0.0
26,575 + Ac3H11_1823 0.54 -1.9
26,575 + Ac3H11_1823 0.54 +0.7
26,575 + Ac3H11_1823 0.54 +0.3
26,576 - Ac3H11_1823 0.54 +0.3
26,596 + Ac3H11_1823 0.58 -0.9
26,596 + Ac3H11_1823 0.58 +0.1
26,596 + Ac3H11_1823 0.58 -0.0
26,597 - Ac3H11_1823 0.59 +0.0
27,267 + Ac3H11_1824 0.59 +1.8
27,267 + Ac3H11_1824 0.59 +3.9
27,267 + Ac3H11_1824 0.59 +0.4
27,268 - Ac3H11_1824 0.59 -1.2
27,268 - Ac3H11_1824 0.59 +0.7
27,324 + Ac3H11_1824 0.67 -1.4
27,324 + Ac3H11_1824 0.67 -0.9
27,324 + Ac3H11_1824 0.67 -1.1
27,324 + Ac3H11_1824 0.67 -0.3
27,325 - Ac3H11_1824 0.67 +1.0
27,325 - Ac3H11_1824 0.67 -0.7
27,325 - Ac3H11_1824 0.67 -0.1
27,366 + Ac3H11_1824 0.72 +0.5
27,366 + Ac3H11_1824 0.72 -1.0
27,366 + Ac3H11_1824 0.72 +0.1
27,366 + Ac3H11_1824 0.72 -0.1
27,366 + Ac3H11_1824 0.72 +0.5
27,367 - Ac3H11_1824 0.72 -2.3
27,367 - Ac3H11_1824 0.72 +1.1
27,367 - Ac3H11_1824 0.72 +0.3
27,423 + Ac3H11_1824 0.80 -1.2
27,463 + Ac3H11_1824 0.85 +0.1
27,463 + Ac3H11_1824 0.85 -1.3
27,463 + Ac3H11_1824 0.85 +1.1
27,463 + Ac3H11_1824 0.85 +1.7
27,463 + Ac3H11_1824 0.85 -0.4
27,464 - Ac3H11_1824 0.85 +0.1
27,464 - Ac3H11_1824 0.85 +0.9
27,471 + Ac3H11_1824 0.86 +0.1
27,471 + Ac3H11_1824 0.86 -0.1
27,694 + Ac3H11_1825 0.15 +0.9
27,725 + Ac3H11_1825 0.18 +1.3
27,725 + Ac3H11_1825 0.18 -1.5
27,725 + Ac3H11_1825 0.18 -1.7
27,725 + Ac3H11_1825 0.18 -1.3
27,725 + Ac3H11_1825 0.18 -1.3
27,725 + Ac3H11_1825 0.18 +0.0
27,725 + Ac3H11_1825 0.18 -0.5
27,726 - Ac3H11_1825 0.18 -1.9
27,726 - Ac3H11_1825 0.18 +0.4
27,726 - Ac3H11_1825 0.18 -1.4
27,726 - Ac3H11_1825 0.18 -0.8
27,726 - Ac3H11_1825 0.18 -0.5
27,790 + Ac3H11_1825 0.26 -2.4
27,790 + Ac3H11_1825 0.26 +1.0
27,790 + Ac3H11_1825 0.26 +0.7
27,790 + Ac3H11_1825 0.26 -0.7
27,791 - Ac3H11_1825 0.26 -0.3
27,791 - Ac3H11_1825 0.26 -0.1
27,791 - Ac3H11_1825 0.26 -0.8
27,857 + Ac3H11_1825 0.34 +0.4
27,857 + Ac3H11_1825 0.34 -1.4
27,858 - Ac3H11_1825 0.34 -1.2
27,995 + Ac3H11_1825 0.50 +0.3
27,996 - Ac3H11_1825 0.50 +0.5
27,996 - Ac3H11_1825 0.50 -1.2
27,996 - Ac3H11_1825 0.50 +1.1
27,996 - Ac3H11_1825 0.50 -0.5
27,996 - Ac3H11_1825 0.50 +0.9
27,996 - Ac3H11_1825 0.50 +1.0
28,319 + Ac3H11_1825 0.87 -0.0
28,319 + Ac3H11_1825 0.87 -0.1
28,319 + Ac3H11_1825 0.87 -0.1
28,319 + Ac3H11_1825 0.87 -0.7
28,320 - Ac3H11_1825 0.87 -0.3
28,320 - Ac3H11_1825 0.87 -0.1
28,320 - Ac3H11_1825 0.87 -1.7
28,379 + +2.4
28,526 + Ac3H11_1826 0.32 +0.1
28,527 - Ac3H11_1826 0.32 -0.8
28,527 - Ac3H11_1826 0.32 -1.9
28,604 + Ac3H11_1826 0.59 -1.3
28,604 + Ac3H11_1826 0.59 -1.4
28,605 - Ac3H11_1826 0.59 +0.0
28,605 - Ac3H11_1826 0.59 -1.7
28,605 - Ac3H11_1826 0.59 -2.1
28,605 - Ac3H11_1826 0.59 -0.4
28,605 - Ac3H11_1826 0.59 -1.4
28,728 + +0.9
28,728 + -2.2
28,729 - -1.9
28,811 + +0.7
28,811 + +0.3
28,811 + -1.7
28,812 - -0.8
28,812 - +0.1
28,922 + Ac3H11_1827 0.19 +1.3
28,922 + Ac3H11_1827 0.19 -1.7
28,923 - Ac3H11_1827 0.19 +0.5
28,923 - Ac3H11_1827 0.19 +0.4
28,923 - Ac3H11_1827 0.19 -0.3
28,923 - Ac3H11_1827 0.19 -0.5
28,923 - Ac3H11_1827 0.19 -0.1
29,007 + Ac3H11_1827 0.30 +0.8
29,008 - Ac3H11_1827 0.30 -0.3
29,139 + Ac3H11_1827 0.46 +1.3
29,139 + Ac3H11_1827 0.46 -1.5
29,187 + Ac3H11_1827 0.52 -0.4
29,188 - Ac3H11_1827 0.52 +0.7
29,188 - Ac3H11_1827 0.52 -1.9
29,358 + Ac3H11_1827 0.73 +3.3
29,358 + Ac3H11_1827 0.73 -0.7
29,358 + Ac3H11_1827 0.73 +0.8
29,358 + Ac3H11_1827 0.73 -0.8
29,359 - Ac3H11_1827 0.74 +1.2
29,359 - Ac3H11_1827 0.74 +3.7
29,359 - Ac3H11_1827 0.74 -1.1
29,359 - Ac3H11_1827 0.74 -1.4

Or see this region's nucleotide sequence