Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1803

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1801 and Ac3H11_1802 are separated by 9 nucleotidesAc3H11_1802 and Ac3H11_1803 are separated by 19 nucleotidesAc3H11_1803 and Ac3H11_1804 are separated by 89 nucleotides Ac3H11_1801 - HflK protein, at 22,119 to 23,438 _1801 Ac3H11_1802 - HflC protein, at 23,448 to 24,356 _1802 Ac3H11_1803 - Putative inner membrane protein YjeT (clustered with HflC), at 24,376 to 24,564 _1803 Ac3H11_1804 - ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17), at 24,654 to 25,802 _1804 Position (kb) 24 25Strain fitness (log2 ratio) -2 -1 0 1 2at 23.465 kb on + strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.466 kb on - strandat 23.547 kb on + strand, within Ac3H11_1802at 23.547 kb on + strand, within Ac3H11_1802at 23.547 kb on + strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.548 kb on - strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.628 kb on + strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.629 kb on - strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.715 kb on + strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.716 kb on - strand, within Ac3H11_1802at 23.748 kb on + strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.749 kb on - strand, within Ac3H11_1802at 23.957 kb on + strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.958 kb on - strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.973 kb on + strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 23.974 kb on - strand, within Ac3H11_1802at 24.123 kb on + strand, within Ac3H11_1802at 24.123 kb on + strand, within Ac3H11_1802at 24.178 kb on - strand, within Ac3H11_1802at 24.237 kb on + strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.238 kb on - strand, within Ac3H11_1802at 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.354 kb on + strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.355 kb on - strandat 24.509 kb on + strand, within Ac3H11_1803at 24.510 kb on - strandat 24.510 kb on - strand, within Ac3H11_1803at 24.562 kb on + strandat 24.585 kb on + strandat 24.619 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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23,465 + +0.8
23,466 - -0.3
23,466 - +0.5
23,466 - +1.9
23,466 - -2.2
23,466 - +0.5
23,466 - -0.8
23,547 + Ac3H11_1802 0.11 +0.5
23,547 + Ac3H11_1802 0.11 -0.7
23,547 + Ac3H11_1802 0.11 -0.9
23,548 - Ac3H11_1802 0.11 -0.3
23,548 - Ac3H11_1802 0.11 +1.5
23,548 - Ac3H11_1802 0.11 +0.6
23,548 - Ac3H11_1802 0.11 -2.0
23,548 - Ac3H11_1802 0.11 -1.2
23,548 - Ac3H11_1802 0.11 -0.9
23,548 - Ac3H11_1802 0.11 +0.2
23,628 + Ac3H11_1802 0.20 -1.5
23,628 + Ac3H11_1802 0.20 -1.1
23,628 + Ac3H11_1802 0.20 -0.5
23,628 + Ac3H11_1802 0.20 -0.3
23,628 + Ac3H11_1802 0.20 -1.4
23,628 + Ac3H11_1802 0.20 -0.1
23,629 - Ac3H11_1802 0.20 +0.1
23,629 - Ac3H11_1802 0.20 -1.4
23,629 - Ac3H11_1802 0.20 -0.3
23,629 - Ac3H11_1802 0.20 -1.9
23,629 - Ac3H11_1802 0.20 -1.4
23,629 - Ac3H11_1802 0.20 -1.3
23,629 - Ac3H11_1802 0.20 -0.7
23,629 - Ac3H11_1802 0.20 -1.5
23,629 - Ac3H11_1802 0.20 -0.2
23,715 + Ac3H11_1802 0.29 -2.0
23,715 + Ac3H11_1802 0.29 -1.1
23,715 + Ac3H11_1802 0.29 +0.2
23,716 - Ac3H11_1802 0.29 -1.0
23,716 - Ac3H11_1802 0.29 -0.5
23,716 - Ac3H11_1802 0.29 +0.5
23,716 - Ac3H11_1802 0.29 -0.1
23,748 + Ac3H11_1802 0.33 -1.5
23,749 - Ac3H11_1802 0.33 -1.5
23,749 - Ac3H11_1802 0.33 -0.1
23,749 - Ac3H11_1802 0.33 -0.6
23,957 + Ac3H11_1802 0.56 -1.7
23,958 - Ac3H11_1802 0.56 -0.6
23,958 - Ac3H11_1802 0.56 +0.4
23,958 - Ac3H11_1802 0.56 -1.3
23,973 + Ac3H11_1802 0.58 +0.2
23,973 + Ac3H11_1802 0.58 -0.1
23,973 + Ac3H11_1802 0.58 -0.4
23,973 + Ac3H11_1802 0.58 -0.5
23,974 - Ac3H11_1802 0.58 -2.0
23,974 - Ac3H11_1802 0.58 -1.3
23,974 - Ac3H11_1802 0.58 +0.5
23,974 - Ac3H11_1802 0.58 +0.7
24,123 + Ac3H11_1802 0.74 -1.9
24,123 + Ac3H11_1802 0.74 +0.7
24,178 - Ac3H11_1802 0.80 +0.8
24,237 + Ac3H11_1802 0.87 +0.2
24,238 - Ac3H11_1802 0.87 -0.5
24,238 - Ac3H11_1802 0.87 -1.3
24,238 - Ac3H11_1802 0.87 -2.0
24,238 - Ac3H11_1802 0.87 -0.3
24,354 + -0.3
24,354 + -0.4
24,354 + +0.2
24,354 + +2.5
24,354 + -0.5
24,354 + +0.9
24,354 + +2.5
24,355 - -0.5
24,355 - +1.5
24,355 - +0.9
24,355 - +0.9
24,355 - -0.2
24,355 - +1.6
24,509 + Ac3H11_1803 0.70 -0.8
24,510 - +1.5
24,510 - Ac3H11_1803 0.71 -0.1
24,562 + -0.3
24,585 + +0.6
24,619 + +0.1

Or see this region's nucleotide sequence