Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1768

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1767 and Ac3H11_1768 are separated by 98 nucleotidesAc3H11_1768 and Ac3H11_1769 are separated by 310 nucleotides Ac3H11_1767 - L-lactate dehydrogenase (EC 1.1.2.3), at 381,294 to 382,553 _1767 Ac3H11_1768 - LysR family transcriptional regulator y2377 (Yersinia pestis KIM), at 382,652 to 383,551 _1768 Ac3H11_1769 - Seryl-tRNA synthetase (EC 6.1.1.11), at 383,862 to 385,223 _1769 Position (kb) 382 383 384Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 381.972 kb on + strand, within Ac3H11_1767at 381.972 kb on + strand, within Ac3H11_1767at 381.972 kb on + strand, within Ac3H11_1767at 381.972 kb on + strand, within Ac3H11_1767at 381.972 kb on + strand, within Ac3H11_1767at 381.972 kb on + strand, within Ac3H11_1767at 381.973 kb on - strand, within Ac3H11_1767at 381.973 kb on - strand, within Ac3H11_1767at 382.057 kb on - strand, within Ac3H11_1767at 382.060 kb on + strand, within Ac3H11_1767at 382.061 kb on - strand, within Ac3H11_1767at 382.061 kb on - strand, within Ac3H11_1767at 382.061 kb on - strand, within Ac3H11_1767at 382.061 kb on - strand, within Ac3H11_1767at 382.061 kb on - strand, within Ac3H11_1767at 382.061 kb on - strand, within Ac3H11_1767at 382.237 kb on + strand, within Ac3H11_1767at 382.238 kb on - strand, within Ac3H11_1767at 382.582 kb on + strandat 382.582 kb on + strandat 382.583 kb on - strandat 382.614 kb on - strandat 382.614 kb on - strandat 382.618 kb on - strandat 383.053 kb on - strand, within Ac3H11_1768at 383.137 kb on - strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.444 kb on + strand, within Ac3H11_1768at 383.450 kb on + strand, within Ac3H11_1768at 383.450 kb on + strand, within Ac3H11_1768at 383.451 kb on - strand, within Ac3H11_1768at 383.451 kb on - strand, within Ac3H11_1768at 383.596 kb on + strandat 383.597 kb on - strandat 383.656 kb on + strandat 383.656 kb on + strandat 383.657 kb on - strandat 383.657 kb on - strandat 383.744 kb on + strandat 383.744 kb on + strandat 383.745 kb on - strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.792 kb on + strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.793 kb on - strandat 383.798 kb on + strandat 383.798 kb on + strandat 383.799 kb on - strandat 383.799 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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381,972 + Ac3H11_1767 0.54 -1.8
381,972 + Ac3H11_1767 0.54 -1.7
381,972 + Ac3H11_1767 0.54 -0.5
381,972 + Ac3H11_1767 0.54 -0.9
381,972 + Ac3H11_1767 0.54 +1.0
381,972 + Ac3H11_1767 0.54 -0.9
381,973 - Ac3H11_1767 0.54 +0.8
381,973 - Ac3H11_1767 0.54 +0.4
382,057 - Ac3H11_1767 0.61 -0.4
382,060 + Ac3H11_1767 0.61 -0.4
382,061 - Ac3H11_1767 0.61 -0.2
382,061 - Ac3H11_1767 0.61 +0.3
382,061 - Ac3H11_1767 0.61 -0.5
382,061 - Ac3H11_1767 0.61 +0.9
382,061 - Ac3H11_1767 0.61 +0.8
382,061 - Ac3H11_1767 0.61 -0.9
382,237 + Ac3H11_1767 0.75 -0.5
382,238 - Ac3H11_1767 0.75 -0.6
382,582 + +5.3
382,582 + +0.3
382,583 - -1.4
382,614 - +1.5
382,614 - -0.4
382,618 - -1.2
383,053 - Ac3H11_1768 0.45 -0.5
383,137 - Ac3H11_1768 0.54 +0.1
383,444 + Ac3H11_1768 0.88 -2.6
383,444 + Ac3H11_1768 0.88 -2.0
383,444 + Ac3H11_1768 0.88 +0.1
383,450 + Ac3H11_1768 0.89 -1.3
383,450 + Ac3H11_1768 0.89 -1.0
383,451 - Ac3H11_1768 0.89 +1.7
383,451 - Ac3H11_1768 0.89 +1.3
383,596 + -0.7
383,597 - +1.0
383,656 + +1.9
383,656 + -1.2
383,657 - -0.3
383,657 - +0.0
383,744 + +1.9
383,744 + +1.5
383,745 - +1.2
383,792 + -0.2
383,792 + +0.4
383,792 + -1.6
383,792 + +1.2
383,793 - +2.0
383,793 - -0.9
383,793 - -0.2
383,793 - +1.6
383,798 + +0.5
383,798 + +0.5
383,799 - -0.5
383,799 - +1.7

Or see this region's nucleotide sequence