Experiment: D-Cycloserine 0.05 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_1766 and Ac3H11_1779 are separated by 94 nucleotides Ac3H11_1779 and Ac3H11_1767 are separated by 74 nucleotides Ac3H11_1767 and Ac3H11_1768 are separated by 98 nucleotides
Ac3H11_1766 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 379,923 to 381,038
_1766
Ac3H11_1779 - tRNA-Ser-CGA, at 381,133 to 381,219
_1779
Ac3H11_1767 - L-lactate dehydrogenase (EC 1.1.2.3), at 381,294 to 382,553
_1767
Ac3H11_1768 - LysR family transcriptional regulator y2377 (Yersinia pestis KIM), at 382,652 to 383,551
_1768
Position (kb) 381
382
383 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 380.463 kb on + strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.463 kb on + strand, within Ac3H11_1766 at 380.464 kb on - strand, within Ac3H11_1766 at 380.464 kb on - strand, within Ac3H11_1766 at 380.550 kb on + strand, within Ac3H11_1766 at 380.550 kb on + strand, within Ac3H11_1766 at 380.551 kb on - strand, within Ac3H11_1766 at 380.640 kb on + strand, within Ac3H11_1766 at 380.994 kb on + strand at 380.995 kb on - strand at 381.044 kb on + strand at 381.044 kb on + strand at 381.045 kb on - strand at 381.045 kb on - strand at 381.045 kb on - strand at 381.437 kb on - strand, within Ac3H11_1767 at 381.437 kb on - strand, within Ac3H11_1767 at 381.437 kb on - strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.972 kb on + strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 381.973 kb on - strand, within Ac3H11_1767 at 382.057 kb on - strand, within Ac3H11_1767 at 382.060 kb on + strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.061 kb on - strand, within Ac3H11_1767 at 382.237 kb on + strand, within Ac3H11_1767 at 382.238 kb on - strand, within Ac3H11_1767 at 382.582 kb on + strand at 382.582 kb on + strand at 382.583 kb on - strand at 382.614 kb on - strand at 382.614 kb on - strand at 382.618 kb on - strand at 383.053 kb on - strand, within Ac3H11_1768 at 383.137 kb on - strand, within Ac3H11_1768 at 383.444 kb on + strand, within Ac3H11_1768 at 383.444 kb on + strand, within Ac3H11_1768 at 383.444 kb on + strand, within Ac3H11_1768 at 383.450 kb on + strand, within Ac3H11_1768 at 383.450 kb on + strand, within Ac3H11_1768 at 383.451 kb on - strand, within Ac3H11_1768 at 383.451 kb on - strand, within Ac3H11_1768
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml remove 380,463 + Ac3H11_1766 0.48 +0.0 380,463 + Ac3H11_1766 0.48 -0.5 380,463 + Ac3H11_1766 0.48 -1.7 380,464 - Ac3H11_1766 0.48 +1.2 380,464 - Ac3H11_1766 0.48 +0.7 380,550 + Ac3H11_1766 0.56 -0.6 380,550 + Ac3H11_1766 0.56 +0.1 380,551 - Ac3H11_1766 0.56 +0.5 380,640 + Ac3H11_1766 0.64 -0.6 380,994 + +1.4 380,995 - -1.8 381,044 + -0.4 381,044 + -0.2 381,045 - +0.5 381,045 - +0.1 381,045 - -2.2 381,437 - Ac3H11_1767 0.11 -1.6 381,437 - Ac3H11_1767 0.11 +1.6 381,437 - Ac3H11_1767 0.11 -0.2 381,972 + Ac3H11_1767 0.54 -1.8 381,972 + Ac3H11_1767 0.54 -1.7 381,972 + Ac3H11_1767 0.54 -0.5 381,972 + Ac3H11_1767 0.54 -0.9 381,972 + Ac3H11_1767 0.54 +1.0 381,972 + Ac3H11_1767 0.54 -0.9 381,973 - Ac3H11_1767 0.54 +0.8 381,973 - Ac3H11_1767 0.54 +0.4 382,057 - Ac3H11_1767 0.61 -0.4 382,060 + Ac3H11_1767 0.61 -0.4 382,061 - Ac3H11_1767 0.61 -0.2 382,061 - Ac3H11_1767 0.61 +0.3 382,061 - Ac3H11_1767 0.61 -0.5 382,061 - Ac3H11_1767 0.61 +0.9 382,061 - Ac3H11_1767 0.61 +0.8 382,061 - Ac3H11_1767 0.61 -0.9 382,237 + Ac3H11_1767 0.75 -0.5 382,238 - Ac3H11_1767 0.75 -0.6 382,582 + +5.3 382,582 + +0.3 382,583 - -1.4 382,614 - +1.5 382,614 - -0.4 382,618 - -1.2 383,053 - Ac3H11_1768 0.45 -0.5 383,137 - Ac3H11_1768 0.54 +0.1 383,444 + Ac3H11_1768 0.88 -2.6 383,444 + Ac3H11_1768 0.88 -2.0 383,444 + Ac3H11_1768 0.88 +0.1 383,450 + Ac3H11_1768 0.89 -1.3 383,450 + Ac3H11_1768 0.89 -1.0 383,451 - Ac3H11_1768 0.89 +1.7 383,451 - Ac3H11_1768 0.89 +1.3
Or see this region's nucleotide sequence