Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1764

Experiment: D-Cycloserine 0.05 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1763 and Ac3H11_1764 are separated by 23 nucleotidesAc3H11_1764 and Ac3H11_1765 overlap by 1 nucleotides Ac3H11_1763 - Adenylate cyclase (EC 4.6.1.1), at 375,072 to 377,384 _1763 Ac3H11_1764 - Selenophosphate-dependent tRNA 2-selenouridine synthase, at 377,408 to 378,553 _1764 Ac3H11_1765 - Selenide,water dikinase (EC 2.7.9.3), at 378,553 to 379,605 _1765 Position (kb) 377 378 379Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 377.383 kb on - strandat 377.383 kb on - strandat 377.383 kb on - strandat 377.383 kb on - strandat 377.541 kb on + strand, within Ac3H11_1764at 377.541 kb on + strand, within Ac3H11_1764at 377.542 kb on - strand, within Ac3H11_1764at 377.547 kb on + strand, within Ac3H11_1764at 377.547 kb on + strand, within Ac3H11_1764at 377.547 kb on + strand, within Ac3H11_1764at 377.547 kb on + strand, within Ac3H11_1764at 377.559 kb on + strand, within Ac3H11_1764at 377.559 kb on + strand, within Ac3H11_1764at 377.559 kb on + strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.560 kb on - strand, within Ac3H11_1764at 377.562 kb on + strand, within Ac3H11_1764at 377.562 kb on + strand, within Ac3H11_1764at 377.562 kb on + strand, within Ac3H11_1764at 377.563 kb on - strand, within Ac3H11_1764at 377.563 kb on - strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.787 kb on + strand, within Ac3H11_1764at 377.788 kb on - strand, within Ac3H11_1764at 377.788 kb on - strand, within Ac3H11_1764at 377.788 kb on - strand, within Ac3H11_1764at 377.788 kb on - strandat 378.183 kb on + strand, within Ac3H11_1764at 378.184 kb on - strand, within Ac3H11_1764at 378.204 kb on + strand, within Ac3H11_1764at 378.273 kb on + strand, within Ac3H11_1764at 378.273 kb on + strand, within Ac3H11_1764at 378.396 kb on + strand, within Ac3H11_1764at 378.397 kb on - strand, within Ac3H11_1764at 378.397 kb on - strand, within Ac3H11_1764at 378.397 kb on - strand, within Ac3H11_1764at 378.749 kb on + strand, within Ac3H11_1765at 378.749 kb on + strand, within Ac3H11_1765at 378.749 kb on + strand, within Ac3H11_1765at 378.750 kb on - strand, within Ac3H11_1765at 378.750 kb on - strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.800 kb on + strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 378.801 kb on - strand, within Ac3H11_1765at 379.068 kb on - strand, within Ac3H11_1765at 379.313 kb on + strand, within Ac3H11_1765at 379.313 kb on + strand, within Ac3H11_1765at 379.313 kb on + strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.314 kb on - strand, within Ac3H11_1765at 379.427 kb on + strand, within Ac3H11_1765at 379.428 kb on - strand, within Ac3H11_1765at 379.428 kb on - strand, within Ac3H11_1765at 379.428 kb on - strand, within Ac3H11_1765

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.05 mg/ml
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377,383 - -1.8
377,383 - -0.2
377,383 - -1.1
377,383 - +1.1
377,541 + Ac3H11_1764 0.12 -2.0
377,541 + Ac3H11_1764 0.12 -1.0
377,542 - Ac3H11_1764 0.12 +0.8
377,547 + Ac3H11_1764 0.12 -1.1
377,547 + Ac3H11_1764 0.12 -0.2
377,547 + Ac3H11_1764 0.12 -2.5
377,547 + Ac3H11_1764 0.12 -0.4
377,559 + Ac3H11_1764 0.13 -0.1
377,559 + Ac3H11_1764 0.13 -0.2
377,559 + Ac3H11_1764 0.13 +0.2
377,560 - Ac3H11_1764 0.13 -0.0
377,560 - Ac3H11_1764 0.13 -0.4
377,560 - Ac3H11_1764 0.13 +0.8
377,560 - Ac3H11_1764 0.13 +0.4
377,562 + Ac3H11_1764 0.13 -2.1
377,562 + Ac3H11_1764 0.13 -0.1
377,562 + Ac3H11_1764 0.13 -1.3
377,563 - Ac3H11_1764 0.14 +0.7
377,563 - Ac3H11_1764 0.14 -2.0
377,787 + Ac3H11_1764 0.33 +0.0
377,787 + Ac3H11_1764 0.33 -0.1
377,787 + Ac3H11_1764 0.33 +0.8
377,787 + Ac3H11_1764 0.33 -0.4
377,787 + Ac3H11_1764 0.33 +0.7
377,787 + Ac3H11_1764 0.33 +1.6
377,788 - Ac3H11_1764 0.33 -0.8
377,788 - Ac3H11_1764 0.33 +2.1
377,788 - Ac3H11_1764 0.33 -2.3
377,788 - +0.4
378,183 + Ac3H11_1764 0.68 -1.4
378,184 - Ac3H11_1764 0.68 -2.7
378,204 + Ac3H11_1764 0.69 -2.0
378,273 + Ac3H11_1764 0.75 -1.7
378,273 + Ac3H11_1764 0.75 +0.5
378,396 + Ac3H11_1764 0.86 -0.1
378,397 - Ac3H11_1764 0.86 -0.0
378,397 - Ac3H11_1764 0.86 +1.8
378,397 - Ac3H11_1764 0.86 +1.0
378,749 + Ac3H11_1765 0.19 +0.0
378,749 + Ac3H11_1765 0.19 +2.2
378,749 + Ac3H11_1765 0.19 -1.4
378,750 - Ac3H11_1765 0.19 +0.7
378,750 - Ac3H11_1765 0.19 -0.3
378,800 + Ac3H11_1765 0.23 +0.6
378,800 + Ac3H11_1765 0.23 -0.9
378,800 + Ac3H11_1765 0.23 +0.4
378,800 + Ac3H11_1765 0.23 +0.5
378,800 + Ac3H11_1765 0.23 -0.5
378,800 + Ac3H11_1765 0.23 +0.1
378,800 + Ac3H11_1765 0.23 +1.1
378,800 + Ac3H11_1765 0.23 +1.2
378,800 + Ac3H11_1765 0.23 +0.8
378,800 + Ac3H11_1765 0.23 +7.3
378,801 - Ac3H11_1765 0.24 -0.5
378,801 - Ac3H11_1765 0.24 +1.5
378,801 - Ac3H11_1765 0.24 +0.4
378,801 - Ac3H11_1765 0.24 +0.7
378,801 - Ac3H11_1765 0.24 -1.8
379,068 - Ac3H11_1765 0.49 -0.1
379,313 + Ac3H11_1765 0.72 +0.4
379,313 + Ac3H11_1765 0.72 +0.1
379,313 + Ac3H11_1765 0.72 +0.4
379,314 - Ac3H11_1765 0.72 -0.5
379,314 - Ac3H11_1765 0.72 +0.8
379,314 - Ac3H11_1765 0.72 -1.6
379,314 - Ac3H11_1765 0.72 -1.8
379,314 - Ac3H11_1765 0.72 -1.4
379,427 + Ac3H11_1765 0.83 -1.8
379,428 - Ac3H11_1765 0.83 +1.8
379,428 - Ac3H11_1765 0.83 +0.1
379,428 - Ac3H11_1765 0.83 +0.4

Or see this region's nucleotide sequence