Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2842

Experiment: MoYLS4 with Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2841 and DvMF_2842 are separated by 219 nucleotidesDvMF_2842 and DvMF_2843 are separated by 179 nucleotides DvMF_2841: DvMF_2841 - response regulator receiver protein (RefSeq), at 3,589,572 to 3,590,009 _2841 DvMF_2842: DvMF_2842 - hypothetical protein (RefSeq), at 3,590,229 to 3,590,525 _2842 DvMF_2843: DvMF_2843 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,590,705 to 3,592,348 _2843 Position (kb) 3590 3591Strain fitness (log2 ratio) -1 0 1 2at 3589.344 kb on - strandat 3589.506 kb on - strandat 3589.698 kb on + strand, within DvMF_2841at 3589.717 kb on + strand, within DvMF_2841at 3589.817 kb on - strand, within DvMF_2841at 3589.820 kb on - strand, within DvMF_2841at 3590.198 kb on + strandat 3590.242 kb on + strandat 3590.439 kb on - strand, within DvMF_2842at 3590.451 kb on - strand, within DvMF_2842at 3590.454 kb on + strand, within DvMF_2842at 3590.471 kb on + strand, within DvMF_2842at 3590.511 kb on - strandat 3590.539 kb on - strandat 3590.875 kb on + strand, within DvMF_2843at 3590.883 kb on - strand, within DvMF_2843at 3590.942 kb on - strand, within DvMF_2843at 3590.978 kb on - strand, within DvMF_2843at 3591.011 kb on + strand, within DvMF_2843at 3591.054 kb on + strand, within DvMF_2843at 3591.300 kb on + strand, within DvMF_2843at 3591.390 kb on + strand, within DvMF_2843at 3591.467 kb on + strand, within DvMF_2843

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM
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3,589,344 - -0.1
3,589,506 - -0.4
3,589,698 + DvMF_2841 0.29 +0.8
3,589,717 + DvMF_2841 0.33 -1.4
3,589,817 - DvMF_2841 0.56 -0.2
3,589,820 - DvMF_2841 0.57 -1.2
3,590,198 + -1.0
3,590,242 + +1.7
3,590,439 - DvMF_2842 0.71 +1.1
3,590,451 - DvMF_2842 0.75 +1.9
3,590,454 + DvMF_2842 0.76 +1.7
3,590,471 + DvMF_2842 0.81 +2.0
3,590,511 - +1.9
3,590,539 - +1.0
3,590,875 + DvMF_2843 0.10 +2.1
3,590,883 - DvMF_2843 0.11 +1.5
3,590,942 - DvMF_2843 0.14 +1.4
3,590,978 - DvMF_2843 0.17 +1.6
3,591,011 + DvMF_2843 0.19 +1.8
3,591,054 + DvMF_2843 0.21 +1.3
3,591,300 + DvMF_2843 0.36 +1.0
3,591,390 + DvMF_2843 0.42 +1.4
3,591,467 + DvMF_2843 0.46 +1.1

Or see this region's nucleotide sequence