Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2755

Experiment: MoYLS4 with Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2754 and DvMF_2755 are separated by 347 nucleotidesDvMF_2755 and purT are separated by 432 nucleotides DvMF_2754: DvMF_2754 - ABC transporter related (RefSeq), at 3,479,540 to 3,480,256 _2754 DvMF_2755: DvMF_2755 - response regulator receiver protein (RefSeq), at 3,480,604 to 3,481,008 _2755 DvMF_2756: purT - phosphoribosylglycinamide formyltransferase 2 (RefSeq), at 3,481,441 to 3,482,622 purT Position (kb) 3480 3481 3482Strain fitness (log2 ratio) -1 0 1 2at 3479.657 kb on + strand, within DvMF_2754at 3479.696 kb on - strand, within DvMF_2754at 3479.719 kb on + strand, within DvMF_2754at 3480.006 kb on - strand, within DvMF_2754at 3480.413 kb on + strandat 3480.697 kb on + strand, within DvMF_2755at 3481.046 kb on + strandat 3481.054 kb on - strandat 3481.121 kb on + strandat 3481.121 kb on + strandat 3481.164 kb on + strandat 3481.172 kb on - strandat 3481.172 kb on - strandat 3481.402 kb on - strandat 3481.586 kb on + strand, within purTat 3481.644 kb on - strand, within purTat 3481.890 kb on + strand, within purTat 3481.893 kb on - strand, within purTat 3481.914 kb on - strand, within purTat 3481.930 kb on + strand, within purTat 3481.930 kb on + strand, within purTat 3481.968 kb on + strand, within purT

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM
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3,479,657 + DvMF_2754 0.16 -0.0
3,479,696 - DvMF_2754 0.22 +0.6
3,479,719 + DvMF_2754 0.25 -0.0
3,480,006 - DvMF_2754 0.65 +0.1
3,480,413 + -0.3
3,480,697 + DvMF_2755 0.23 +1.9
3,481,046 + +1.1
3,481,054 - +0.2
3,481,121 + +1.2
3,481,121 + +1.1
3,481,164 + -0.5
3,481,172 - +0.0
3,481,172 - +1.5
3,481,402 - -1.3
3,481,586 + purT DvMF_2756 0.12 -0.7
3,481,644 - purT DvMF_2756 0.17 -0.8
3,481,890 + purT DvMF_2756 0.38 -0.3
3,481,893 - purT DvMF_2756 0.38 +0.0
3,481,914 - purT DvMF_2756 0.40 -1.1
3,481,930 + purT DvMF_2756 0.41 +0.2
3,481,930 + purT DvMF_2756 0.41 -0.6
3,481,968 + purT DvMF_2756 0.45 +0.1

Or see this region's nucleotide sequence