Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2661

Experiment: MoYLS4 with Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2660 and DvMF_2661 are separated by 207 nucleotidesDvMF_2661 and DvMF_2662 are separated by 331 nucleotides DvMF_2660: DvMF_2660 - Fe-S cluster assembly protein NifU (RefSeq), at 3,359,874 to 3,360,719 _2660 DvMF_2661: DvMF_2661 - metal dependent phosphohydrolase (RefSeq), at 3,360,927 to 3,361,910 _2661 DvMF_2662: DvMF_2662 - metal dependent phosphohydrolase (RefSeq), at 3,362,242 to 3,363,258 _2662 Position (kb) 3360 3361 3362Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3359.941 kb on - strandat 3359.948 kb on - strandat 3360.162 kb on + strand, within DvMF_2660at 3360.165 kb on - strand, within DvMF_2660at 3360.475 kb on - strand, within DvMF_2660at 3360.493 kb on + strand, within DvMF_2660at 3360.515 kb on - strand, within DvMF_2660at 3360.651 kb on - strandat 3360.919 kb on + strandat 3360.924 kb on + strandat 3360.927 kb on - strandat 3361.137 kb on + strand, within DvMF_2661at 3361.225 kb on + strand, within DvMF_2661at 3361.360 kb on - strand, within DvMF_2661at 3361.360 kb on - strand, within DvMF_2661at 3361.600 kb on + strand, within DvMF_2661at 3361.637 kb on - strand, within DvMF_2661at 3361.881 kb on + strandat 3361.894 kb on + strandat 3361.961 kb on + strandat 3362.079 kb on - strandat 3362.163 kb on + strandat 3362.168 kb on + strandat 3362.289 kb on + strandat 3362.426 kb on + strand, within DvMF_2662at 3362.427 kb on - strand, within DvMF_2662at 3362.585 kb on + strand, within DvMF_2662at 3362.598 kb on - strand, within DvMF_2662at 3362.653 kb on + strand, within DvMF_2662at 3362.722 kb on + strand, within DvMF_2662at 3362.723 kb on + strand, within DvMF_2662at 3362.723 kb on - strand, within DvMF_2662at 3362.723 kb on - strand, within DvMF_2662at 3362.741 kb on + strand, within DvMF_2662at 3362.749 kb on - strand, within DvMF_2662at 3362.776 kb on - strand, within DvMF_2662

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM
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3,359,941 - -0.6
3,359,948 - -0.7
3,360,162 + DvMF_2660 0.34 -0.9
3,360,165 - DvMF_2660 0.34 -0.6
3,360,475 - DvMF_2660 0.71 -0.8
3,360,493 + DvMF_2660 0.73 +0.1
3,360,515 - DvMF_2660 0.76 -0.8
3,360,651 - -0.4
3,360,919 + -1.0
3,360,924 + +0.0
3,360,927 - -0.5
3,361,137 + DvMF_2661 0.21 -2.4
3,361,225 + DvMF_2661 0.30 -0.3
3,361,360 - DvMF_2661 0.44 -3.4
3,361,360 - DvMF_2661 0.44 -1.2
3,361,600 + DvMF_2661 0.68 -3.8
3,361,637 - DvMF_2661 0.72 -2.2
3,361,881 + -1.5
3,361,894 + -3.5
3,361,961 + -0.1
3,362,079 - +0.2
3,362,163 + -0.3
3,362,168 + -2.1
3,362,289 + -0.6
3,362,426 + DvMF_2662 0.18 -1.3
3,362,427 - DvMF_2662 0.18 -0.4
3,362,585 + DvMF_2662 0.34 -0.8
3,362,598 - DvMF_2662 0.35 -1.3
3,362,653 + DvMF_2662 0.40 -0.7
3,362,722 + DvMF_2662 0.47 -0.9
3,362,723 + DvMF_2662 0.47 -0.7
3,362,723 - DvMF_2662 0.47 +0.0
3,362,723 - DvMF_2662 0.47 -0.1
3,362,741 + DvMF_2662 0.49 -1.0
3,362,749 - DvMF_2662 0.50 -0.7
3,362,776 - DvMF_2662 0.53 -0.6

Or see this region's nucleotide sequence