Experiment: MoYLS4 with Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2428 and DvMF_2429 are separated by 16 nucleotides DvMF_2429 and DvMF_2430 are separated by 233 nucleotides DvMF_2430 and DvMF_2431 are separated by 86 nucleotides DvMF_2431 and DvMF_2432 are separated by 19 nucleotides DvMF_2432 and DvMF_2433 are separated by 9 nucleotides
DvMF_2428: DvMF_2428 - hypothetical protein (RefSeq), at 3,066,022 to 3,066,240
_2428
DvMF_2429: DvMF_2429 - hypothetical protein (RefSeq), at 3,066,257 to 3,066,511
_2429
DvMF_2430: DvMF_2430 - hypothetical protein (RefSeq), at 3,066,745 to 3,067,110
_2430
DvMF_2431: DvMF_2431 - hypothetical protein (RefSeq), at 3,067,197 to 3,067,970
_2431
DvMF_2432: DvMF_2432 - type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq), at 3,067,990 to 3,068,823
_2432
DvMF_2433: DvMF_2433 - hypothetical protein (RefSeq), at 3,068,833 to 3,069,570
_2433
Position (kb)
3067
3068 Strain fitness (log2 ratio)
-1
0
1 at 3066.319 kb on - strand, within DvMF_2429 at 3066.422 kb on + strand, within DvMF_2429 at 3066.427 kb on + strand, within DvMF_2429 at 3066.435 kb on - strand, within DvMF_2429 at 3066.435 kb on - strand, within DvMF_2429 at 3066.458 kb on + strand, within DvMF_2429 at 3066.514 kb on - strand at 3066.580 kb on + strand at 3066.586 kb on + strand at 3066.793 kb on + strand, within DvMF_2430 at 3066.836 kb on - strand, within DvMF_2430 at 3066.956 kb on - strand, within DvMF_2430 at 3067.004 kb on - strand, within DvMF_2430 at 3067.113 kb on - strand at 3067.235 kb on + strand at 3067.559 kb on + strand, within DvMF_2431 at 3067.580 kb on + strand, within DvMF_2431 at 3067.670 kb on + strand, within DvMF_2431 at 3067.722 kb on - strand, within DvMF_2431 at 3067.862 kb on - strand, within DvMF_2431 at 3067.952 kb on + strand at 3068.118 kb on + strand, within DvMF_2432 at 3068.118 kb on + strand, within DvMF_2432 at 3068.126 kb on - strand, within DvMF_2432 at 3068.825 kb on - strand at 3068.825 kb on - strand at 3068.943 kb on - strand, within DvMF_2433
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM remove 3,066,319 - DvMF_2429 0.24 +0.4 3,066,422 + DvMF_2429 0.65 -0.5 3,066,427 + DvMF_2429 0.67 -0.0 3,066,435 - DvMF_2429 0.70 +0.1 3,066,435 - DvMF_2429 0.70 -0.7 3,066,458 + DvMF_2429 0.79 -0.4 3,066,514 - -0.1 3,066,580 + -0.4 3,066,586 + -0.8 3,066,793 + DvMF_2430 0.13 -0.3 3,066,836 - DvMF_2430 0.25 +0.0 3,066,956 - DvMF_2430 0.58 -0.8 3,067,004 - DvMF_2430 0.71 -0.7 3,067,113 - -0.1 3,067,235 + -0.4 3,067,559 + DvMF_2431 0.47 -1.0 3,067,580 + DvMF_2431 0.49 -0.9 3,067,670 + DvMF_2431 0.61 -0.9 3,067,722 - DvMF_2431 0.68 -0.7 3,067,862 - DvMF_2431 0.86 -1.1 3,067,952 + -0.3 3,068,118 + DvMF_2432 0.15 -0.2 3,068,118 + DvMF_2432 0.15 -0.7 3,068,126 - DvMF_2432 0.16 -0.9 3,068,825 - +0.4 3,068,825 - -0.5 3,068,943 - DvMF_2433 0.15 -0.1
Or see this region's nucleotide sequence