Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2431

Experiment: MoYLS4 with Vanillin 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2428 and DvMF_2429 are separated by 16 nucleotidesDvMF_2429 and DvMF_2430 are separated by 233 nucleotidesDvMF_2430 and DvMF_2431 are separated by 86 nucleotidesDvMF_2431 and DvMF_2432 are separated by 19 nucleotidesDvMF_2432 and DvMF_2433 are separated by 9 nucleotides DvMF_2428: DvMF_2428 - hypothetical protein (RefSeq), at 3,066,022 to 3,066,240 _2428 DvMF_2429: DvMF_2429 - hypothetical protein (RefSeq), at 3,066,257 to 3,066,511 _2429 DvMF_2430: DvMF_2430 - hypothetical protein (RefSeq), at 3,066,745 to 3,067,110 _2430 DvMF_2431: DvMF_2431 - hypothetical protein (RefSeq), at 3,067,197 to 3,067,970 _2431 DvMF_2432: DvMF_2432 - type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq), at 3,067,990 to 3,068,823 _2432 DvMF_2433: DvMF_2433 - hypothetical protein (RefSeq), at 3,068,833 to 3,069,570 _2433 Position (kb) 3067 3068Strain fitness (log2 ratio) -1 0 1at 3066.319 kb on - strand, within DvMF_2429at 3066.422 kb on + strand, within DvMF_2429at 3066.427 kb on + strand, within DvMF_2429at 3066.435 kb on - strand, within DvMF_2429at 3066.435 kb on - strand, within DvMF_2429at 3066.458 kb on + strand, within DvMF_2429at 3066.514 kb on - strandat 3066.580 kb on + strandat 3066.586 kb on + strandat 3066.793 kb on + strand, within DvMF_2430at 3066.836 kb on - strand, within DvMF_2430at 3066.956 kb on - strand, within DvMF_2430at 3067.004 kb on - strand, within DvMF_2430at 3067.113 kb on - strandat 3067.235 kb on + strandat 3067.559 kb on + strand, within DvMF_2431at 3067.580 kb on + strand, within DvMF_2431at 3067.670 kb on + strand, within DvMF_2431at 3067.722 kb on - strand, within DvMF_2431at 3067.862 kb on - strand, within DvMF_2431at 3067.952 kb on + strandat 3068.118 kb on + strand, within DvMF_2432at 3068.118 kb on + strand, within DvMF_2432at 3068.126 kb on - strand, within DvMF_2432at 3068.825 kb on - strandat 3068.825 kb on - strandat 3068.943 kb on - strand, within DvMF_2433

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM
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3,066,319 - DvMF_2429 0.24 +0.4
3,066,422 + DvMF_2429 0.65 -0.5
3,066,427 + DvMF_2429 0.67 -0.0
3,066,435 - DvMF_2429 0.70 +0.1
3,066,435 - DvMF_2429 0.70 -0.7
3,066,458 + DvMF_2429 0.79 -0.4
3,066,514 - -0.1
3,066,580 + -0.4
3,066,586 + -0.8
3,066,793 + DvMF_2430 0.13 -0.3
3,066,836 - DvMF_2430 0.25 +0.0
3,066,956 - DvMF_2430 0.58 -0.8
3,067,004 - DvMF_2430 0.71 -0.7
3,067,113 - -0.1
3,067,235 + -0.4
3,067,559 + DvMF_2431 0.47 -1.0
3,067,580 + DvMF_2431 0.49 -0.9
3,067,670 + DvMF_2431 0.61 -0.9
3,067,722 - DvMF_2431 0.68 -0.7
3,067,862 - DvMF_2431 0.86 -1.1
3,067,952 + -0.3
3,068,118 + DvMF_2432 0.15 -0.2
3,068,118 + DvMF_2432 0.15 -0.7
3,068,126 - DvMF_2432 0.16 -0.9
3,068,825 - +0.4
3,068,825 - -0.5
3,068,943 - DvMF_2433 0.15 -0.1

Or see this region's nucleotide sequence