Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2325

Experiment: MoYLS4 with Vanillin 2.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2324 and DvMF_2325 are separated by 121 nucleotidesDvMF_2325 and DvMF_2326 are separated by 288 nucleotides DvMF_2324: DvMF_2324 - PAS/PAC sensor hybrid histidine kinase (RefSeq), at 2,926,030 to 2,929,518 _2324 DvMF_2325: DvMF_2325 - ectoine/hydroxyectoine ABC transporter solute-binding protein (RefSeq), at 2,929,640 to 2,930,539 _2325 DvMF_2326: DvMF_2326 - TPR repeat-containing protein (RefSeq), at 2,930,828 to 2,931,592 _2326 Position (kb) 2929 2930 2931Strain fitness (log2 ratio) -1 0 1at 2928.800 kb on - strand, within DvMF_2324at 2928.895 kb on - strand, within DvMF_2324at 2928.946 kb on + strand, within DvMF_2324at 2928.946 kb on + strand, within DvMF_2324at 2928.954 kb on - strand, within DvMF_2324at 2929.222 kb on + strandat 2929.230 kb on - strandat 2929.429 kb on + strandat 2929.445 kb on + strandat 2929.527 kb on - strandat 2929.645 kb on + strandat 2929.705 kb on + strandat 2929.916 kb on + strand, within DvMF_2325at 2929.939 kb on + strand, within DvMF_2325at 2929.947 kb on - strand, within DvMF_2325at 2930.009 kb on - strand, within DvMF_2325at 2930.068 kb on + strand, within DvMF_2325at 2930.076 kb on - strand, within DvMF_2325at 2930.284 kb on - strand, within DvMF_2325at 2930.489 kb on - strandat 2930.612 kb on - strandat 2930.705 kb on + strandat 2930.713 kb on - strandat 2931.200 kb on + strand, within DvMF_2326at 2931.503 kb on + strand, within DvMF_2326

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM
remove
2,928,800 - DvMF_2324 0.79 -0.3
2,928,895 - DvMF_2324 0.82 -0.3
2,928,946 + DvMF_2324 0.84 -1.1
2,928,946 + DvMF_2324 0.84 -0.0
2,928,954 - DvMF_2324 0.84 -0.0
2,929,222 + -0.2
2,929,230 - -1.0
2,929,429 + -0.2
2,929,445 + +0.3
2,929,527 - -0.6
2,929,645 + -0.5
2,929,705 + +0.0
2,929,916 + DvMF_2325 0.31 +1.6
2,929,939 + DvMF_2325 0.33 -0.3
2,929,947 - DvMF_2325 0.34 +0.1
2,930,009 - DvMF_2325 0.41 -0.2
2,930,068 + DvMF_2325 0.48 +0.1
2,930,076 - DvMF_2325 0.48 -0.2
2,930,284 - DvMF_2325 0.72 +0.0
2,930,489 - -0.4
2,930,612 - -0.7
2,930,705 + -0.7
2,930,713 - -0.4
2,931,200 + DvMF_2326 0.49 -0.4
2,931,503 + DvMF_2326 0.88 -0.3

Or see this region's nucleotide sequence