Experiment: MoYLS4 with Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1830 and DvMF_1831 are separated by 484 nucleotides DvMF_1831 and DvMF_1832 overlap by 4 nucleotides
DvMF_1830: DvMF_1830 - hypothetical protein (RefSeq), at 2,233,878 to 2,234,846
_1830
DvMF_1831: DvMF_1831 - transcriptional regulator, MarR family (RefSeq), at 2,235,331 to 2,235,993
_1831
DvMF_1832: DvMF_1832 - N-acylneuraminate-9-phosphate synthase (RefSeq), at 2,235,990 to 2,237,174
_1832
Position (kb)
2235
2236 Strain fitness (log2 ratio)
-1
0
1 at 2234.667 kb on - strand, within DvMF_1830 at 2234.670 kb on + strand, within DvMF_1830 at 2234.681 kb on + strand, within DvMF_1830 at 2234.706 kb on - strand, within DvMF_1830 at 2234.760 kb on - strand at 2234.882 kb on + strand at 2234.926 kb on + strand at 2234.974 kb on - strand at 2234.979 kb on - strand at 2235.165 kb on - strand at 2235.172 kb on + strand at 2235.349 kb on + strand at 2235.357 kb on - strand at 2235.357 kb on - strand at 2235.599 kb on - strand, within DvMF_1831 at 2235.687 kb on + strand, within DvMF_1831 at 2235.725 kb on - strand, within DvMF_1831 at 2235.843 kb on + strand, within DvMF_1831 at 2235.846 kb on - strand, within DvMF_1831 at 2235.995 kb on - strand at 2236.205 kb on + strand, within DvMF_1832 at 2236.255 kb on + strand, within DvMF_1832 at 2236.359 kb on + strand, within DvMF_1832 at 2236.402 kb on - strand, within DvMF_1832 at 2236.423 kb on - strand, within DvMF_1832 at 2236.625 kb on - strand, within DvMF_1832 at 2236.668 kb on - strand, within DvMF_1832 at 2236.725 kb on - strand, within DvMF_1832 at 2236.786 kb on - strand, within DvMF_1832 at 2236.800 kb on - strand, within DvMF_1832 at 2236.840 kb on - strand, within DvMF_1832 at 2236.853 kb on - strand, within DvMF_1832
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM remove 2,234,667 - DvMF_1830 0.81 +0.0 2,234,670 + DvMF_1830 0.82 -0.6 2,234,681 + DvMF_1830 0.83 -0.4 2,234,706 - DvMF_1830 0.85 -1.2 2,234,760 - -0.6 2,234,882 + -0.8 2,234,926 + -0.5 2,234,974 - -0.4 2,234,979 - -0.4 2,235,165 - +0.2 2,235,172 + -0.3 2,235,349 + -0.3 2,235,357 - +0.8 2,235,357 - -0.6 2,235,599 - DvMF_1831 0.40 -1.0 2,235,687 + DvMF_1831 0.54 -1.1 2,235,725 - DvMF_1831 0.59 -0.4 2,235,843 + DvMF_1831 0.77 -0.5 2,235,846 - DvMF_1831 0.78 -0.5 2,235,995 - +0.2 2,236,205 + DvMF_1832 0.18 -0.2 2,236,255 + DvMF_1832 0.22 -1.1 2,236,359 + DvMF_1832 0.31 -0.6 2,236,402 - DvMF_1832 0.35 -0.5 2,236,423 - DvMF_1832 0.37 -0.3 2,236,625 - DvMF_1832 0.54 -0.1 2,236,668 - DvMF_1832 0.57 -0.5 2,236,725 - DvMF_1832 0.62 -0.8 2,236,786 - DvMF_1832 0.67 -0.6 2,236,800 - DvMF_1832 0.68 -0.5 2,236,840 - DvMF_1832 0.72 -0.2 2,236,853 - DvMF_1832 0.73 -0.1
Or see this region's nucleotide sequence