Experiment: MoYLS4 with Vanillin 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0619 and DvMF_0620 overlap by 4 nucleotides DvMF_0620 and DvMF_0621 are separated by 294 nucleotides DvMF_0621 and DvMF_0622 are separated by 628 nucleotides
DvMF_0619: DvMF_0619 - CheA signal transduction histidine kinase (RefSeq), at 738,048 to 740,432
_0619
DvMF_0620: DvMF_0620 - CheW protein (RefSeq), at 740,429 to 741,067
_0620
DvMF_0621: DvMF_0621 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 741,362 to 743,545
_0621
DvMF_0622: DvMF_0622 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 744,174 to 744,716
_0622
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -1
0
1 at 740.573 kb on - strand, within DvMF_0620 at 740.865 kb on + strand, within DvMF_0620 at 741.072 kb on - strand at 741.175 kb on - strand at 741.629 kb on + strand, within DvMF_0621 at 741.763 kb on + strand, within DvMF_0621 at 741.782 kb on - strand, within DvMF_0621 at 742.109 kb on - strand, within DvMF_0621 at 742.166 kb on + strand, within DvMF_0621 at 742.474 kb on + strand, within DvMF_0621 at 742.520 kb on + strand, within DvMF_0621 at 742.571 kb on - strand, within DvMF_0621 at 742.844 kb on + strand, within DvMF_0621 at 742.857 kb on - strand, within DvMF_0621 at 742.920 kb on + strand, within DvMF_0621 at 742.928 kb on - strand, within DvMF_0621 at 743.171 kb on + strand, within DvMF_0621 at 743.553 kb on + strand at 743.553 kb on + strand at 743.718 kb on + strand at 743.751 kb on - strand at 744.299 kb on - strand, within DvMF_0622
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 2.5 mM remove 740,573 - DvMF_0620 0.23 +0.2 740,865 + DvMF_0620 0.68 +1.0 741,072 - -0.1 741,175 - +0.8 741,629 + DvMF_0621 0.12 +0.7 741,763 + DvMF_0621 0.18 +0.6 741,782 - DvMF_0621 0.19 +0.4 742,109 - DvMF_0621 0.34 +0.5 742,166 + DvMF_0621 0.37 +0.1 742,474 + DvMF_0621 0.51 +0.6 742,520 + DvMF_0621 0.53 +0.3 742,571 - DvMF_0621 0.55 -0.8 742,844 + DvMF_0621 0.68 -0.2 742,857 - DvMF_0621 0.68 +0.3 742,920 + DvMF_0621 0.71 +0.3 742,928 - DvMF_0621 0.72 +0.2 743,171 + DvMF_0621 0.83 +0.5 743,553 + -0.3 743,553 + -0.2 743,718 + -1.7 743,751 - -0.5 744,299 - DvMF_0622 0.23 -0.5
Or see this region's nucleotide sequence