Experiment: Benzethonium chloride 0.00078125 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt proA and tRNA-Gly are separated by 157 nucleotides tRNA-Gly and ribH are separated by 61 nucleotides ribH and psbZ are separated by 9 nucleotides psbZ and Synpcc7942_2246 are separated by 206 nucleotides
Synpcc7942_2243: proA - Glutamate-5-semialdehyde dehydrogenase, at 2,308,253 to 2,309,497
proA
Synpcc7942_R0009: tRNA-Gly - tRNA-Gly, at 2,309,655 to 2,309,726
tRNA-Gly
Synpcc7942_2244: ribH - riboflavin synthase subunit beta, at 2,309,788 to 2,310,333
ribH
Synpcc7942_2245: psbZ - photosystem II reaction center protein PsbZ, at 2,310,343 to 2,310,531
psbZ
Synpcc7942_2246: Synpcc7942_2246 - hypothetical protein, at 2,310,738 to 2,312,300
_2246
Position (kb)
2309
2310
2311 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 2308.797 kb on + strand, within proA at 2308.797 kb on + strand, within proA at 2308.814 kb on - strand, within proA at 2308.829 kb on - strand, within proA at 2308.834 kb on + strand, within proA at 2308.845 kb on + strand, within proA at 2308.853 kb on - strand, within proA at 2308.920 kb on - strand, within proA at 2308.937 kb on + strand, within proA at 2308.955 kb on - strand, within proA at 2308.956 kb on - strand, within proA at 2308.967 kb on + strand, within proA at 2309.005 kb on + strand, within proA at 2309.047 kb on + strand, within proA at 2309.066 kb on - strand, within proA at 2309.125 kb on - strand, within proA at 2309.143 kb on - strand, within proA at 2309.157 kb on + strand, within proA at 2309.157 kb on + strand, within proA at 2309.157 kb on - strand, within proA at 2309.163 kb on + strand, within proA at 2309.165 kb on - strand, within proA at 2309.177 kb on - strand, within proA at 2309.236 kb on + strand, within proA at 2309.287 kb on + strand, within proA at 2309.287 kb on + strand, within proA at 2309.295 kb on - strand, within proA at 2309.295 kb on - strand, within proA at 2309.320 kb on + strand, within proA at 2309.337 kb on + strand, within proA at 2309.387 kb on + strand at 2309.395 kb on - strand at 2309.399 kb on + strand at 2309.407 kb on + strand at 2309.427 kb on + strand at 2309.428 kb on + strand at 2309.434 kb on - strand at 2309.436 kb on - strand at 2309.457 kb on + strand at 2309.557 kb on + strand at 2309.565 kb on - strand at 2309.569 kb on + strand at 2309.574 kb on + strand at 2309.577 kb on - strand at 2309.577 kb on - strand at 2309.584 kb on - strand at 2310.389 kb on + strand, within psbZ at 2310.497 kb on + strand, within psbZ at 2310.545 kb on + strand at 2310.665 kb on - strand at 2310.680 kb on + strand at 2310.685 kb on + strand at 2310.692 kb on - strand at 2310.773 kb on - strand at 2310.822 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.845 kb on + strand at 2310.853 kb on - strand at 2310.853 kb on - strand at 2310.853 kb on - strand at 2310.853 kb on - strand at 2310.867 kb on - strand at 2310.869 kb on + strand at 2310.911 kb on + strand, within Synpcc7942_2246 at 2310.924 kb on - strand, within Synpcc7942_2246 at 2310.935 kb on + strand, within Synpcc7942_2246 at 2310.942 kb on + strand, within Synpcc7942_2246 at 2310.942 kb on + strand, within Synpcc7942_2246 at 2310.942 kb on + strand, within Synpcc7942_2246 at 2310.950 kb on - strand, within Synpcc7942_2246 at 2310.972 kb on + strand, within Synpcc7942_2246 at 2310.984 kb on + strand, within Synpcc7942_2246 at 2310.984 kb on + strand, within Synpcc7942_2246 at 2311.030 kb on + strand, within Synpcc7942_2246 at 2311.030 kb on + strand, within Synpcc7942_2246 at 2311.038 kb on - strand, within Synpcc7942_2246 at 2311.092 kb on - strand, within Synpcc7942_2246 at 2311.144 kb on + strand, within Synpcc7942_2246 at 2311.144 kb on + strand, within Synpcc7942_2246 at 2311.200 kb on + strand, within Synpcc7942_2246 at 2311.210 kb on + strand, within Synpcc7942_2246 at 2311.210 kb on + strand, within Synpcc7942_2246 at 2311.213 kb on - strand, within Synpcc7942_2246 at 2311.330 kb on + strand, within Synpcc7942_2246 at 2311.330 kb on + strand, within Synpcc7942_2246
Per-strain Table
Position Strand Gene LocusTag Fraction Benzethonium chloride 0.00078125 mM remove 2,308,797 + proA Synpcc7942_2243 0.44 -0.0 2,308,797 + proA Synpcc7942_2243 0.44 -0.6 2,308,814 - proA Synpcc7942_2243 0.45 -0.9 2,308,829 - proA Synpcc7942_2243 0.46 -1.6 2,308,834 + proA Synpcc7942_2243 0.47 +0.1 2,308,845 + proA Synpcc7942_2243 0.48 +0.7 2,308,853 - proA Synpcc7942_2243 0.48 -2.0 2,308,920 - proA Synpcc7942_2243 0.54 -0.0 2,308,937 + proA Synpcc7942_2243 0.55 +0.5 2,308,955 - proA Synpcc7942_2243 0.56 +0.9 2,308,956 - proA Synpcc7942_2243 0.56 +1.6 2,308,967 + proA Synpcc7942_2243 0.57 -1.2 2,309,005 + proA Synpcc7942_2243 0.60 +0.5 2,309,047 + proA Synpcc7942_2243 0.64 -0.6 2,309,066 - proA Synpcc7942_2243 0.65 +1.1 2,309,125 - proA Synpcc7942_2243 0.70 -1.0 2,309,143 - proA Synpcc7942_2243 0.71 -1.4 2,309,157 + proA Synpcc7942_2243 0.73 +0.4 2,309,157 + proA Synpcc7942_2243 0.73 -2.0 2,309,157 - proA Synpcc7942_2243 0.73 +1.5 2,309,163 + proA Synpcc7942_2243 0.73 +0.4 2,309,165 - proA Synpcc7942_2243 0.73 -1.4 2,309,177 - proA Synpcc7942_2243 0.74 -1.0 2,309,236 + proA Synpcc7942_2243 0.79 -1.7 2,309,287 + proA Synpcc7942_2243 0.83 +0.6 2,309,287 + proA Synpcc7942_2243 0.83 -0.6 2,309,295 - proA Synpcc7942_2243 0.84 +0.7 2,309,295 - proA Synpcc7942_2243 0.84 -1.3 2,309,320 + proA Synpcc7942_2243 0.86 +1.9 2,309,337 + proA Synpcc7942_2243 0.87 -1.6 2,309,387 + -1.4 2,309,395 - -0.0 2,309,399 + -1.6 2,309,407 + +1.2 2,309,427 + +0.8 2,309,428 + -0.9 2,309,434 - +2.8 2,309,436 - +0.5 2,309,457 + -0.6 2,309,557 + +0.5 2,309,565 - +1.2 2,309,569 + -0.5 2,309,574 + -1.0 2,309,577 - +0.5 2,309,577 - +1.7 2,309,584 - +2.2 2,310,389 + psbZ Synpcc7942_2245 0.24 +1.9 2,310,497 + psbZ Synpcc7942_2245 0.81 +0.1 2,310,545 + +0.1 2,310,665 - +2.8 2,310,680 + +0.9 2,310,685 + -0.1 2,310,692 - +1.5 2,310,773 - +0.1 2,310,822 + -3.2 2,310,845 + -2.1 2,310,845 + -3.2 2,310,845 + -3.4 2,310,845 + -1.1 2,310,845 + -3.5 2,310,853 - -2.4 2,310,853 - -0.1 2,310,853 - -0.1 2,310,853 - -1.3 2,310,867 - -1.6 2,310,869 + -3.1 2,310,911 + Synpcc7942_2246 0.11 -3.3 2,310,924 - Synpcc7942_2246 0.12 -1.1 2,310,935 + Synpcc7942_2246 0.13 -3.1 2,310,942 + Synpcc7942_2246 0.13 -1.1 2,310,942 + Synpcc7942_2246 0.13 -1.6 2,310,942 + Synpcc7942_2246 0.13 -2.6 2,310,950 - Synpcc7942_2246 0.14 -2.4 2,310,972 + Synpcc7942_2246 0.15 -1.1 2,310,984 + Synpcc7942_2246 0.16 -3.6 2,310,984 + Synpcc7942_2246 0.16 -2.4 2,311,030 + Synpcc7942_2246 0.19 -2.6 2,311,030 + Synpcc7942_2246 0.19 -3.6 2,311,038 - Synpcc7942_2246 0.19 -3.2 2,311,092 - Synpcc7942_2246 0.23 -1.6 2,311,144 + Synpcc7942_2246 0.26 -3.4 2,311,144 + Synpcc7942_2246 0.26 -5.6 2,311,200 + Synpcc7942_2246 0.30 -3.2 2,311,210 + Synpcc7942_2246 0.30 -1.6 2,311,210 + Synpcc7942_2246 0.30 -3.6 2,311,213 - Synpcc7942_2246 0.30 -1.6 2,311,330 + Synpcc7942_2246 0.38 -2.1 2,311,330 + Synpcc7942_2246 0.38 -2.6
Or see this region's nucleotide sequence