Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_839

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_838 and Pf1N1B4_839 are separated by 83 nucleotidesPf1N1B4_839 and Pf1N1B4_840 are separated by 98 nucleotides Pf1N1B4_838 - hypothetical protein, at 961,518 to 966,230 _838 Pf1N1B4_839 - GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2), at 966,314 to 967,891 _839 Pf1N1B4_840 - Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) / CBS domain, at 967,990 to 969,459 _840 Position (kb) 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 965.400 kb on + strand, within Pf1N1B4_838at 965.400 kb on + strand, within Pf1N1B4_838at 965.401 kb on - strand, within Pf1N1B4_838at 965.401 kb on - strand, within Pf1N1B4_838at 965.487 kb on + strand, within Pf1N1B4_838at 965.487 kb on + strand, within Pf1N1B4_838at 965.487 kb on + strand, within Pf1N1B4_838at 965.488 kb on - strand, within Pf1N1B4_838at 965.488 kb on - strand, within Pf1N1B4_838at 965.513 kb on + strand, within Pf1N1B4_838at 965.513 kb on + strand, within Pf1N1B4_838at 965.513 kb on + strand, within Pf1N1B4_838at 965.513 kb on + strand, within Pf1N1B4_838at 965.513 kb on + strand, within Pf1N1B4_838at 965.513 kb on + strand, within Pf1N1B4_838at 965.514 kb on - strand, within Pf1N1B4_838at 965.514 kb on - strand, within Pf1N1B4_838at 965.514 kb on - strand, within Pf1N1B4_838at 965.514 kb on - strand, within Pf1N1B4_838at 965.514 kb on - strand, within Pf1N1B4_838at 965.514 kb on - strand, within Pf1N1B4_838at 965.537 kb on + strand, within Pf1N1B4_838at 965.537 kb on + strand, within Pf1N1B4_838at 965.537 kb on + strand, within Pf1N1B4_838at 965.537 kb on + strand, within Pf1N1B4_838at 965.537 kb on + strand, within Pf1N1B4_838at 965.537 kb on + strandat 965.537 kb on + strand, within Pf1N1B4_838at 965.537 kb on + strand, within Pf1N1B4_838at 965.538 kb on - strand, within Pf1N1B4_838at 965.538 kb on - strand, within Pf1N1B4_838at 965.538 kb on - strand, within Pf1N1B4_838at 965.538 kb on - strand, within Pf1N1B4_838at 965.538 kb on - strand, within Pf1N1B4_838at 965.538 kb on - strand, within Pf1N1B4_838at 965.551 kb on + strand, within Pf1N1B4_838at 965.551 kb on + strand, within Pf1N1B4_838at 965.551 kb on + strand, within Pf1N1B4_838at 965.552 kb on - strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.610 kb on + strand, within Pf1N1B4_838at 965.611 kb on - strand, within Pf1N1B4_838at 965.611 kb on - strand, within Pf1N1B4_838at 965.611 kb on - strand, within Pf1N1B4_838at 965.611 kb on - strand, within Pf1N1B4_838at 965.611 kb on - strand, within Pf1N1B4_838at 965.611 kb on - strand, within Pf1N1B4_838at 965.612 kb on + strand, within Pf1N1B4_838at 965.613 kb on - strand, within Pf1N1B4_838at 965.613 kb on - strand, within Pf1N1B4_838at 965.613 kb on - strand, within Pf1N1B4_838at 965.613 kb on - strand, within Pf1N1B4_838at 965.775 kb on - strandat 965.779 kb on - strandat 966.012 kb on + strandat 966.012 kb on + strandat 966.012 kb on + strandat 966.013 kb on - strandat 966.013 kb on - strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.042 kb on + strandat 966.043 kb on - strandat 966.043 kb on - strandat 966.043 kb on - strandat 966.105 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.108 kb on + strandat 966.109 kb on - strandat 966.109 kb on - strandat 966.109 kb on - strandat 966.109 kb on - strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.111 kb on + strandat 966.112 kb on - strandat 966.112 kb on - strandat 966.228 kb on + strandat 966.228 kb on + strandat 967.911 kb on - strandat 967.911 kb on - strandat 967.954 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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965,400 + Pf1N1B4_838 0.82 -0.2
965,400 + Pf1N1B4_838 0.82 -1.4
965,401 - Pf1N1B4_838 0.82 -2.2
965,401 - Pf1N1B4_838 0.82 +1.2
965,487 + Pf1N1B4_838 0.84 -0.2
965,487 + Pf1N1B4_838 0.84 +0.5
965,487 + Pf1N1B4_838 0.84 +0.2
965,488 - Pf1N1B4_838 0.84 +2.5
965,488 - Pf1N1B4_838 0.84 +0.2
965,513 + Pf1N1B4_838 0.85 -0.8
965,513 + Pf1N1B4_838 0.85 -1.8
965,513 + Pf1N1B4_838 0.85 -1.4
965,513 + Pf1N1B4_838 0.85 -1.8
965,513 + Pf1N1B4_838 0.85 -0.8
965,513 + Pf1N1B4_838 0.85 +0.2
965,514 - Pf1N1B4_838 0.85 -2.4
965,514 - Pf1N1B4_838 0.85 -0.5
965,514 - Pf1N1B4_838 0.85 -1.3
965,514 - Pf1N1B4_838 0.85 -1.4
965,514 - Pf1N1B4_838 0.85 +0.5
965,514 - Pf1N1B4_838 0.85 -2.2
965,537 + Pf1N1B4_838 0.85 +0.3
965,537 + Pf1N1B4_838 0.85 -2.0
965,537 + Pf1N1B4_838 0.85 -1.4
965,537 + Pf1N1B4_838 0.85 -0.8
965,537 + Pf1N1B4_838 0.85 +0.5
965,537 + +0.2
965,537 + Pf1N1B4_838 0.85 -0.8
965,537 + Pf1N1B4_838 0.85 -0.1
965,538 - Pf1N1B4_838 0.85 +0.9
965,538 - Pf1N1B4_838 0.85 -1.8
965,538 - Pf1N1B4_838 0.85 +1.7
965,538 - Pf1N1B4_838 0.85 +1.6
965,538 - Pf1N1B4_838 0.85 +0.6
965,538 - Pf1N1B4_838 0.85 +1.6
965,551 + Pf1N1B4_838 0.86 -1.2
965,551 + Pf1N1B4_838 0.86 -0.4
965,551 + Pf1N1B4_838 0.86 -0.8
965,552 - Pf1N1B4_838 0.86 -0.3
965,610 + Pf1N1B4_838 0.87 +0.7
965,610 + Pf1N1B4_838 0.87 +0.2
965,610 + Pf1N1B4_838 0.87 +0.2
965,610 + Pf1N1B4_838 0.87 -1.8
965,610 + Pf1N1B4_838 0.87 +0.6
965,610 + Pf1N1B4_838 0.87 +2.5
965,610 + Pf1N1B4_838 0.87 +1.7
965,610 + Pf1N1B4_838 0.87 -2.8
965,610 + Pf1N1B4_838 0.87 -1.2
965,610 + Pf1N1B4_838 0.87 +0.2
965,610 + Pf1N1B4_838 0.87 -0.2
965,610 + Pf1N1B4_838 0.87 -3.3
965,611 - Pf1N1B4_838 0.87 +0.7
965,611 - Pf1N1B4_838 0.87 -2.2
965,611 - Pf1N1B4_838 0.87 -2.7
965,611 - Pf1N1B4_838 0.87 -2.2
965,611 - Pf1N1B4_838 0.87 -1.4
965,611 - Pf1N1B4_838 0.87 +0.9
965,612 + Pf1N1B4_838 0.87 -1.1
965,613 - Pf1N1B4_838 0.87 +0.2
965,613 - Pf1N1B4_838 0.87 +0.2
965,613 - Pf1N1B4_838 0.87 -1.8
965,613 - Pf1N1B4_838 0.87 +0.2
965,775 - +0.6
965,779 - -1.4
966,012 + -2.4
966,012 + -1.8
966,012 + -0.1
966,013 - -0.6
966,013 - -0.8
966,042 + -0.3
966,042 + +1.0
966,042 + -0.8
966,042 + +0.2
966,042 + -0.4
966,042 + +0.2
966,042 + +0.2
966,042 + -1.2
966,042 + -1.1
966,043 - +0.2
966,043 - -0.6
966,043 - -0.4
966,105 + +0.2
966,108 + +0.2
966,108 + +0.2
966,108 + +1.7
966,108 + -1.0
966,108 + -2.2
966,108 + +0.7
966,108 + -0.1
966,108 + +1.4
966,108 + -0.4
966,108 + -2.8
966,108 + +1.5
966,108 + -2.0
966,109 - -2.7
966,109 - +1.2
966,109 - +0.5
966,109 - +0.6
966,111 + +1.2
966,111 + +1.5
966,111 + -1.8
966,111 + -2.4
966,111 + +1.3
966,111 + +1.2
966,111 + +0.2
966,111 + +0.2
966,111 + -1.4
966,111 + -2.8
966,112 - -0.4
966,112 - +2.1
966,228 + -0.6
966,228 + -2.2
967,911 - +1.5
967,911 - +0.5
967,954 - -0.4

Or see this region's nucleotide sequence