Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_815 and Pf1N1B4_816 are separated by 161 nucleotides Pf1N1B4_816 and Pf1N1B4_817 are separated by 41 nucleotides Pf1N1B4_817 and Pf1N1B4_818 are separated by 161 nucleotides
Pf1N1B4_815 - iron-chelator utilization protein, at 932,869 to 933,666
_815
Pf1N1B4_816 - Integral membrane protein, at 933,828 to 934,433
_816
Pf1N1B4_817 - FIG00955104: hypothetical protein, at 934,475 to 934,705
_817
Pf1N1B4_818 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 934,867 to 936,255
_818
Position (kb) 934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 933.535 kb on + strand, within Pf1N1B4_815 at 933.535 kb on + strand, within Pf1N1B4_815 at 933.536 kb on - strand, within Pf1N1B4_815 at 933.584 kb on + strand, within Pf1N1B4_815 at 933.664 kb on + strand at 933.694 kb on - strand at 933.958 kb on + strand, within Pf1N1B4_816 at 934.006 kb on + strand, within Pf1N1B4_816 at 934.007 kb on - strand, within Pf1N1B4_816 at 934.007 kb on - strand, within Pf1N1B4_816 at 934.007 kb on - strand at 934.007 kb on - strand, within Pf1N1B4_816 at 934.018 kb on + strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.019 kb on - strand, within Pf1N1B4_816 at 934.055 kb on + strand, within Pf1N1B4_816 at 934.056 kb on - strand, within Pf1N1B4_816 at 934.082 kb on - strand, within Pf1N1B4_816 at 934.177 kb on + strand, within Pf1N1B4_816 at 934.178 kb on - strand, within Pf1N1B4_816 at 934.375 kb on - strand at 934.375 kb on - strand at 934.375 kb on - strand at 934.375 kb on - strand at 934.379 kb on - strand at 934.379 kb on - strand at 934.379 kb on - strand at 934.390 kb on + strand at 934.390 kb on + strand at 934.391 kb on - strand at 934.391 kb on - strand at 934.509 kb on + strand, within Pf1N1B4_817 at 934.510 kb on - strand, within Pf1N1B4_817 at 934.573 kb on + strand, within Pf1N1B4_817 at 934.574 kb on - strand at 934.632 kb on + strand, within Pf1N1B4_817 at 934.632 kb on + strand, within Pf1N1B4_817 at 934.632 kb on + strand, within Pf1N1B4_817 at 934.633 kb on - strand, within Pf1N1B4_817 at 934.808 kb on + strand at 934.808 kb on + strand at 934.808 kb on + strand at 934.809 kb on - strand at 934.814 kb on + strand at 934.855 kb on + strand at 934.855 kb on + strand at 934.855 kb on + strand at 934.871 kb on + strand at 934.986 kb on + strand at 934.987 kb on - strand at 935.097 kb on - strand, within Pf1N1B4_818 at 935.097 kb on - strand, within Pf1N1B4_818 at 935.097 kb on - strand, within Pf1N1B4_818 at 935.103 kb on - strand at 935.103 kb on - strand, within Pf1N1B4_818 at 935.182 kb on - strand, within Pf1N1B4_818 at 935.220 kb on + strand, within Pf1N1B4_818 at 935.220 kb on + strand, within Pf1N1B4_818 at 935.309 kb on + strand, within Pf1N1B4_818 at 935.309 kb on + strand, within Pf1N1B4_818 at 935.310 kb on - strand, within Pf1N1B4_818 at 935.310 kb on - strand, within Pf1N1B4_818 at 935.364 kb on - strand, within Pf1N1B4_818 at 935.429 kb on + strand, within Pf1N1B4_818 at 935.429 kb on + strand at 935.430 kb on - strand, within Pf1N1B4_818 at 935.430 kb on - strand, within Pf1N1B4_818 at 935.430 kb on - strand, within Pf1N1B4_818
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 933,535 + Pf1N1B4_815 0.83 -0.9 933,535 + Pf1N1B4_815 0.83 -0.5 933,536 - Pf1N1B4_815 0.84 +1.7 933,584 + Pf1N1B4_815 0.90 -1.5 933,664 + -0.5 933,694 - -0.2 933,958 + Pf1N1B4_816 0.21 -0.3 934,006 + Pf1N1B4_816 0.29 +0.1 934,007 - Pf1N1B4_816 0.30 +2.7 934,007 - Pf1N1B4_816 0.30 -1.2 934,007 - +0.1 934,007 - Pf1N1B4_816 0.30 -0.6 934,018 + Pf1N1B4_816 0.31 +1.3 934,019 - Pf1N1B4_816 0.32 +2.4 934,019 - Pf1N1B4_816 0.32 -0.9 934,019 - Pf1N1B4_816 0.32 -0.1 934,055 + Pf1N1B4_816 0.37 +0.9 934,056 - Pf1N1B4_816 0.38 -2.2 934,082 - Pf1N1B4_816 0.42 -0.1 934,177 + Pf1N1B4_816 0.58 -1.5 934,178 - Pf1N1B4_816 0.58 -0.5 934,375 - +0.1 934,375 - -0.9 934,375 - +1.5 934,375 - +2.1 934,379 - +3.1 934,379 - -0.9 934,379 - -0.9 934,390 + +2.1 934,390 + +1.4 934,391 - -1.1 934,391 - -1.5 934,509 + Pf1N1B4_817 0.15 -0.2 934,510 - Pf1N1B4_817 0.15 -1.0 934,573 + Pf1N1B4_817 0.42 -1.5 934,574 - -0.9 934,632 + Pf1N1B4_817 0.68 -0.9 934,632 + Pf1N1B4_817 0.68 -0.9 934,632 + Pf1N1B4_817 0.68 -2.5 934,633 - Pf1N1B4_817 0.68 -0.1 934,808 + +1.4 934,808 + -1.5 934,808 + -0.9 934,809 - +1.3 934,814 + -1.5 934,855 + -2.2 934,855 + -1.0 934,855 + -1.5 934,871 + -1.5 934,986 + +0.8 934,987 - -0.9 935,097 - Pf1N1B4_818 0.17 -1.5 935,097 - Pf1N1B4_818 0.17 -0.5 935,097 - Pf1N1B4_818 0.17 -2.2 935,103 - +0.1 935,103 - Pf1N1B4_818 0.17 -0.9 935,182 - Pf1N1B4_818 0.23 -0.9 935,220 + Pf1N1B4_818 0.25 -0.9 935,220 + Pf1N1B4_818 0.25 +0.1 935,309 + Pf1N1B4_818 0.32 +0.4 935,309 + Pf1N1B4_818 0.32 +1.7 935,310 - Pf1N1B4_818 0.32 +1.1 935,310 - Pf1N1B4_818 0.32 +1.0 935,364 - Pf1N1B4_818 0.36 -0.4 935,429 + Pf1N1B4_818 0.40 -0.3 935,429 + +0.1 935,430 - Pf1N1B4_818 0.41 +0.1 935,430 - Pf1N1B4_818 0.41 +0.3 935,430 - Pf1N1B4_818 0.41 -3.3
Or see this region's nucleotide sequence