Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_779 and Pf1N1B4_780 are separated by 621 nucleotides Pf1N1B4_780 and Pf1N1B4_781 are separated by 188 nucleotides
Pf1N1B4_779 - hypothetical protein, at 883,677 to 884,372
_779
Pf1N1B4_780 - Tryptophan synthase beta chain like (EC 4.2.1.20), at 884,994 to 885,350
_780
Pf1N1B4_781 - hydrolase, alpha/beta fold family, at 885,539 to 886,582
_781
Position (kb) 884
885
886 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 884.015 kb on + strand, within Pf1N1B4_779 at 884.015 kb on + strand, within Pf1N1B4_779 at 884.016 kb on - strand, within Pf1N1B4_779 at 884.017 kb on + strand at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.017 kb on + strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.018 kb on - strand, within Pf1N1B4_779 at 884.059 kb on + strand, within Pf1N1B4_779 at 884.060 kb on - strand, within Pf1N1B4_779 at 884.162 kb on + strand, within Pf1N1B4_779 at 884.355 kb on + strand at 884.355 kb on + strand at 884.355 kb on + strand at 884.385 kb on + strand at 884.386 kb on - strand at 884.386 kb on - strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.391 kb on + strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.392 kb on - strand at 884.394 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.407 kb on + strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.408 kb on - strand at 884.488 kb on + strand at 884.488 kb on + strand at 884.489 kb on - strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.515 kb on + strand at 884.516 kb on - strand at 884.516 kb on - strand at 884.516 kb on - strand at 884.652 kb on + strand at 884.662 kb on + strand at 884.668 kb on + strand at 884.683 kb on - strand at 884.683 kb on - strand at 884.704 kb on + strand at 884.704 kb on + strand at 884.791 kb on - strand at 884.791 kb on - strand at 884.794 kb on - strand at 884.803 kb on - strand at 884.859 kb on + strand at 884.859 kb on + strand at 884.859 kb on + strand at 884.860 kb on - strand at 884.860 kb on - strand at 884.860 kb on - strand at 884.901 kb on + strand at 884.915 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.918 kb on + strand at 884.919 kb on - strand at 884.919 kb on - strand at 884.948 kb on + strand at 884.949 kb on - strand at 884.949 kb on - strand at 884.949 kb on - strand at 884.973 kb on - strand at 884.975 kb on + strand at 885.096 kb on + strand, within Pf1N1B4_780 at 885.099 kb on + strand, within Pf1N1B4_780 at 885.099 kb on + strand, within Pf1N1B4_780 at 885.150 kb on + strand, within Pf1N1B4_780 at 885.150 kb on + strand, within Pf1N1B4_780 at 885.151 kb on - strand, within Pf1N1B4_780 at 885.151 kb on - strand, within Pf1N1B4_780 at 885.348 kb on + strand at 885.348 kb on + strand at 885.365 kb on + strand at 885.365 kb on + strand at 885.366 kb on - strand at 885.443 kb on + strand at 885.444 kb on - strand at 885.612 kb on + strand at 885.612 kb on + strand at 885.720 kb on - strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.870 kb on + strand, within Pf1N1B4_781 at 885.871 kb on - strand, within Pf1N1B4_781 at 885.871 kb on - strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.099 kb on + strand, within Pf1N1B4_781 at 886.314 kb on + strand, within Pf1N1B4_781
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 884,015 + Pf1N1B4_779 0.49 -1.5 884,015 + Pf1N1B4_779 0.49 -0.1 884,016 - Pf1N1B4_779 0.49 -0.9 884,017 + +0.7 884,017 + Pf1N1B4_779 0.49 -1.5 884,017 + Pf1N1B4_779 0.49 -0.9 884,017 + Pf1N1B4_779 0.49 -0.2 884,017 + Pf1N1B4_779 0.49 -1.5 884,017 + Pf1N1B4_779 0.49 -1.5 884,017 + Pf1N1B4_779 0.49 +1.5 884,017 + Pf1N1B4_779 0.49 -0.9 884,017 + Pf1N1B4_779 0.49 +0.1 884,017 + Pf1N1B4_779 0.49 -2.7 884,018 - Pf1N1B4_779 0.49 -0.9 884,018 - Pf1N1B4_779 0.49 +2.0 884,018 - Pf1N1B4_779 0.49 -0.9 884,018 - Pf1N1B4_779 0.49 +0.7 884,018 - Pf1N1B4_779 0.49 -0.7 884,018 - Pf1N1B4_779 0.49 +1.3 884,018 - Pf1N1B4_779 0.49 -1.1 884,018 - Pf1N1B4_779 0.49 -1.5 884,018 - Pf1N1B4_779 0.49 -1.9 884,018 - Pf1N1B4_779 0.49 -1.5 884,018 - Pf1N1B4_779 0.49 -0.1 884,018 - Pf1N1B4_779 0.49 -1.7 884,018 - Pf1N1B4_779 0.49 -2.2 884,018 - Pf1N1B4_779 0.49 -2.2 884,018 - Pf1N1B4_779 0.49 -1.9 884,059 + Pf1N1B4_779 0.55 -1.9 884,060 - Pf1N1B4_779 0.55 +0.6 884,162 + Pf1N1B4_779 0.70 -1.5 884,355 + -3.1 884,355 + +0.4 884,355 + -1.5 884,385 + -1.5 884,386 - +1.4 884,386 - -0.5 884,391 + -2.5 884,391 + -0.1 884,391 + +2.1 884,391 + +1.7 884,391 + +0.4 884,392 - +0.2 884,392 - -2.7 884,392 - +2.6 884,392 - +0.6 884,392 - -1.5 884,392 - -2.2 884,392 - +1.1 884,394 + +0.7 884,407 + -0.1 884,407 + +1.2 884,407 + -0.9 884,407 + +3.3 884,407 + -0.9 884,407 + -0.9 884,408 - -0.5 884,408 - -1.7 884,408 - -1.6 884,408 - -1.5 884,408 - -0.7 884,408 - -1.5 884,408 - -0.9 884,408 - -1.9 884,408 - -1.3 884,408 - +0.1 884,408 - -1.9 884,408 - -1.6 884,408 - -2.2 884,408 - -1.9 884,408 - -1.1 884,408 - -2.1 884,408 - -2.2 884,408 - -1.9 884,488 + +1.7 884,488 + -1.9 884,489 - -1.1 884,515 + -1.9 884,515 + +1.8 884,515 + -1.6 884,515 + -0.9 884,515 + +1.1 884,515 + +0.1 884,516 - +0.1 884,516 - +0.5 884,516 - +0.1 884,652 + +0.8 884,662 + -0.7 884,668 + -0.9 884,683 - -0.6 884,683 - +0.1 884,704 + -0.4 884,704 + +0.1 884,791 - -2.5 884,791 - -1.9 884,794 - -1.5 884,803 - -1.2 884,859 + +1.7 884,859 + +0.1 884,859 + -0.6 884,860 - -1.2 884,860 - -0.2 884,860 - -2.9 884,901 + +0.1 884,915 + -1.5 884,918 + -1.9 884,918 + -2.9 884,918 + +0.1 884,918 + -0.5 884,918 + +0.3 884,919 - +0.7 884,919 - -0.9 884,948 + +0.8 884,949 - -1.9 884,949 - -0.5 884,949 - -0.3 884,973 - -0.9 884,975 + -0.6 885,096 + Pf1N1B4_780 0.29 -1.9 885,099 + Pf1N1B4_780 0.29 +0.7 885,099 + Pf1N1B4_780 0.29 -3.1 885,150 + Pf1N1B4_780 0.44 -1.2 885,150 + Pf1N1B4_780 0.44 -1.9 885,151 - Pf1N1B4_780 0.44 -0.5 885,151 - Pf1N1B4_780 0.44 -2.5 885,348 + -0.2 885,348 + +0.5 885,365 + +0.1 885,365 + +0.8 885,366 - -1.5 885,443 + +0.4 885,444 - +0.1 885,612 + -0.3 885,612 + +0.1 885,720 - Pf1N1B4_781 0.17 +0.1 885,870 + Pf1N1B4_781 0.32 -1.6 885,870 + Pf1N1B4_781 0.32 -1.5 885,870 + Pf1N1B4_781 0.32 -0.1 885,870 + Pf1N1B4_781 0.32 +0.5 885,871 - Pf1N1B4_781 0.32 +0.1 885,871 - Pf1N1B4_781 0.32 -1.2 886,099 + Pf1N1B4_781 0.54 +0.1 886,099 + Pf1N1B4_781 0.54 -0.9 886,099 + Pf1N1B4_781 0.54 +0.4 886,099 + Pf1N1B4_781 0.54 +1.4 886,314 + Pf1N1B4_781 0.74 -0.9
Or see this region's nucleotide sequence