Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_69

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_68 and Pf1N1B4_69 are separated by 293 nucleotidesPf1N1B4_69 and Pf1N1B4_70 are separated by 388 nucleotides Pf1N1B4_68 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 70,186 to 71,535 _68 Pf1N1B4_69 - Predicted D-glucarate or D-galactorate regulator, GntR family, at 71,829 to 72,542 _69 Pf1N1B4_70 - Major facilitator family transporter, at 72,931 to 74,256 _70 Position (kb) 71 72 73Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 71.044 kb on + strand, within Pf1N1B4_68at 71.044 kb on + strand, within Pf1N1B4_68at 71.045 kb on - strand, within Pf1N1B4_68at 71.045 kb on - strand, within Pf1N1B4_68at 71.566 kb on + strandat 71.566 kb on + strandat 71.566 kb on + strandat 71.566 kb on + strandat 71.566 kb on + strandat 71.566 kb on + strandat 71.566 kb on + strandat 71.567 kb on - strandat 71.569 kb on + strandat 71.569 kb on + strandat 71.570 kb on - strandat 71.722 kb on + strandat 71.722 kb on + strandat 71.722 kb on + strandat 71.722 kb on + strandat 71.862 kb on - strandat 71.871 kb on + strandat 71.872 kb on - strandat 72.028 kb on - strand, within Pf1N1B4_69at 72.028 kb on - strand, within Pf1N1B4_69at 72.139 kb on + strand, within Pf1N1B4_69at 72.140 kb on - strand, within Pf1N1B4_69at 72.303 kb on + strand, within Pf1N1B4_69at 72.304 kb on - strand, within Pf1N1B4_69at 72.577 kb on - strandat 72.648 kb on - strandat 72.749 kb on - strandat 72.915 kb on + strandat 72.916 kb on - strandat 72.916 kb on - strandat 72.916 kb on - strandat 73.024 kb on + strandat 73.024 kb on + strandat 73.024 kb on + strandat 73.024 kb on + strandat 73.024 kb on + strandat 73.024 kb on + strandat 73.025 kb on - strandat 73.025 kb on - strandat 73.262 kb on - strand, within Pf1N1B4_70at 73.318 kb on + strandat 73.319 kb on - strand, within Pf1N1B4_70at 73.319 kb on - strand, within Pf1N1B4_70at 73.321 kb on + strand, within Pf1N1B4_70at 73.321 kb on + strand, within Pf1N1B4_70at 73.322 kb on - strand, within Pf1N1B4_70at 73.392 kb on - strandat 73.471 kb on + strand, within Pf1N1B4_70at 73.471 kb on + strandat 73.471 kb on + strand, within Pf1N1B4_70at 73.472 kb on - strand, within Pf1N1B4_70at 73.472 kb on - strand, within Pf1N1B4_70at 73.472 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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71,044 + Pf1N1B4_68 0.64 -0.2
71,044 + Pf1N1B4_68 0.64 -0.6
71,045 - Pf1N1B4_68 0.64 -0.2
71,045 - Pf1N1B4_68 0.64 -2.2
71,566 + +2.1
71,566 + -1.1
71,566 + -3.2
71,566 + -0.2
71,566 + -1.2
71,566 + +1.4
71,566 + -1.8
71,567 - +1.2
71,569 + -0.6
71,569 + -1.2
71,570 - +0.8
71,722 + -3.0
71,722 + -1.8
71,722 + -0.2
71,722 + -1.1
71,862 - +1.1
71,871 + +0.3
71,872 - -1.8
72,028 - Pf1N1B4_69 0.28 +2.8
72,028 - Pf1N1B4_69 0.28 +1.2
72,139 + Pf1N1B4_69 0.43 +1.1
72,140 - Pf1N1B4_69 0.44 -1.8
72,303 + Pf1N1B4_69 0.66 -2.2
72,304 - Pf1N1B4_69 0.67 -1.2
72,577 - +2.4
72,648 - -0.2
72,749 - +0.8
72,915 + -0.2
72,916 - +0.8
72,916 - +1.4
72,916 - -0.2
73,024 + +1.4
73,024 + -0.8
73,024 + -1.3
73,024 + -2.5
73,024 + +0.5
73,024 + -0.2
73,025 - +1.4
73,025 - -2.5
73,262 - Pf1N1B4_70 0.25 +0.9
73,318 + -0.2
73,319 - Pf1N1B4_70 0.29 +1.6
73,319 - Pf1N1B4_70 0.29 -0.8
73,321 + Pf1N1B4_70 0.29 -0.2
73,321 + Pf1N1B4_70 0.29 -0.2
73,322 - Pf1N1B4_70 0.29 -1.0
73,392 - +0.4
73,471 + Pf1N1B4_70 0.41 -1.8
73,471 + +0.8
73,471 + Pf1N1B4_70 0.41 -0.7
73,472 - Pf1N1B4_70 0.41 +0.0
73,472 - Pf1N1B4_70 0.41 -0.9
73,472 - +0.8

Or see this region's nucleotide sequence