Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_6029

Experiment: Fusidic 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf1N1B4_6026 and Pf1N1B4_6027 are separated by 165 nucleotidesPf1N1B4_6027 and Pf1N1B4_6028 are separated by 131 nucleotidesPf1N1B4_6028 and Pf1N1B4_6029 are separated by 38 nucleotidesPf1N1B4_6029 and Pf1N1B4_6030 are separated by 33 nucleotidesPf1N1B4_6030 and Pf1N1B4_6031 overlap by 4 nucleotides Pf1N1B4_6026 - lipoprotein, putative, at 492,334 to 492,651 _6026 Pf1N1B4_6027 - FIG00955358: hypothetical protein, at 492,817 to 493,122 _6027 Pf1N1B4_6028 - FIG00954052: hypothetical protein, at 493,254 to 493,460 _6028 Pf1N1B4_6029 - uridine nucleosidase (EC 3.2.2.3) (from data), at 493,499 to 494,527 _6029 Pf1N1B4_6030 - Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1), at 494,561 to 494,965 _6030 Pf1N1B4_6031 - Ribokinase (EC 2.7.1.15) (from data), at 494,962 to 495,879 _6031 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 492.586 kb on - strand, within Pf1N1B4_6026at 492.586 kb on - strand, within Pf1N1B4_6026at 492.586 kb on - strand, within Pf1N1B4_6026at 492.671 kb on - strandat 492.674 kb on + strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.675 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.806 kb on - strandat 492.821 kb on + strandat 492.822 kb on - strandat 492.822 kb on - strandat 492.822 kb on - strandat 492.834 kb on - strandat 492.834 kb on - strandat 492.924 kb on - strand, within Pf1N1B4_6027at 492.924 kb on - strand, within Pf1N1B4_6027at 492.990 kb on + strand, within Pf1N1B4_6027at 492.991 kb on - strand, within Pf1N1B4_6027at 493.005 kb on - strand, within Pf1N1B4_6027at 493.005 kb on - strand, within Pf1N1B4_6027at 493.164 kb on - strandat 493.182 kb on - strandat 493.182 kb on - strandat 493.182 kb on - strandat 493.182 kb on - strandat 493.264 kb on + strandat 493.314 kb on + strand, within Pf1N1B4_6028at 493.314 kb on + strand, within Pf1N1B4_6028at 493.353 kb on - strandat 493.422 kb on + strand, within Pf1N1B4_6028at 493.423 kb on - strandat 493.423 kb on - strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.434 kb on + strand, within Pf1N1B4_6028at 493.435 kb on - strand, within Pf1N1B4_6028at 493.435 kb on - strandat 493.435 kb on - strand, within Pf1N1B4_6028at 493.435 kb on - strand, within Pf1N1B4_6028at 493.435 kb on - strand, within Pf1N1B4_6028at 493.436 kb on + strand, within Pf1N1B4_6028at 493.437 kb on - strand, within Pf1N1B4_6028at 493.500 kb on + strandat 493.501 kb on - strandat 493.501 kb on - strandat 493.501 kb on - strandat 493.501 kb on - strandat 493.600 kb on - strandat 493.600 kb on - strandat 493.652 kb on + strand, within Pf1N1B4_6029at 493.652 kb on + strand, within Pf1N1B4_6029at 493.653 kb on - strandat 493.696 kb on - strand, within Pf1N1B4_6029at 493.709 kb on - strand, within Pf1N1B4_6029at 493.764 kb on + strand, within Pf1N1B4_6029at 493.765 kb on - strand, within Pf1N1B4_6029at 493.765 kb on - strand, within Pf1N1B4_6029at 493.765 kb on - strand, within Pf1N1B4_6029at 493.875 kb on + strand, within Pf1N1B4_6029at 493.876 kb on - strand, within Pf1N1B4_6029at 494.118 kb on + strand, within Pf1N1B4_6029at 494.119 kb on - strand, within Pf1N1B4_6029at 494.119 kb on - strand, within Pf1N1B4_6029at 494.209 kb on - strand, within Pf1N1B4_6029at 494.209 kb on - strandat 494.209 kb on - strand, within Pf1N1B4_6029at 494.351 kb on - strand, within Pf1N1B4_6029at 494.517 kb on + strandat 494.518 kb on - strandat 494.518 kb on - strandat 494.563 kb on - strandat 494.563 kb on - strandat 494.563 kb on - strandat 494.571 kb on - strandat 494.571 kb on - strandat 494.599 kb on - strandat 494.792 kb on + strand, within Pf1N1B4_6030at 494.792 kb on + strand, within Pf1N1B4_6030at 494.792 kb on + strand, within Pf1N1B4_6030at 494.792 kb on + strand, within Pf1N1B4_6030at 494.793 kb on - strand, within Pf1N1B4_6030at 494.793 kb on - strand, within Pf1N1B4_6030at 494.806 kb on + strand, within Pf1N1B4_6030at 494.807 kb on - strand, within Pf1N1B4_6030at 494.807 kb on - strand, within Pf1N1B4_6030at 494.974 kb on - strandat 494.983 kb on + strandat 494.983 kb on + strandat 494.983 kb on + strandat 494.984 kb on - strandat 494.984 kb on - strandat 494.984 kb on - strandat 495.493 kb on + strand, within Pf1N1B4_6031at 495.494 kb on - strand, within Pf1N1B4_6031

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
remove
492,586 - Pf1N1B4_6026 0.79 +0.2
492,586 - Pf1N1B4_6026 0.79 -0.4
492,586 - Pf1N1B4_6026 0.79 +0.2
492,671 - -2.0
492,674 + -2.7
492,675 - -2.0
492,675 - -1.0
492,675 - -2.2
492,675 - -0.8
492,675 - -3.6
492,675 - -1.7
492,675 - -0.4
492,675 - -2.0
492,675 - -0.9
492,675 - -1.1
492,675 - -0.4
492,806 - -3.6
492,806 - -2.0
492,806 - +1.0
492,806 - -0.7
492,806 - -0.4
492,821 + -0.4
492,822 - -0.4
492,822 - -0.7
492,822 - -1.2
492,834 - -2.7
492,834 - -0.4
492,924 - Pf1N1B4_6027 0.35 -0.6
492,924 - Pf1N1B4_6027 0.35 -1.6
492,990 + Pf1N1B4_6027 0.57 +1.4
492,991 - Pf1N1B4_6027 0.57 +0.9
493,005 - Pf1N1B4_6027 0.61 -0.7
493,005 - Pf1N1B4_6027 0.61 -1.4
493,164 - +2.2
493,182 - -1.0
493,182 - -0.4
493,182 - +0.6
493,182 - -0.4
493,264 + +1.2
493,314 + Pf1N1B4_6028 0.29 +0.3
493,314 + Pf1N1B4_6028 0.29 +0.6
493,353 - -0.4
493,422 + Pf1N1B4_6028 0.81 -0.4
493,423 - -2.0
493,423 - Pf1N1B4_6028 0.82 -0.4
493,434 + Pf1N1B4_6028 0.87 -0.4
493,434 + Pf1N1B4_6028 0.87 +0.6
493,434 + Pf1N1B4_6028 0.87 -0.4
493,434 + Pf1N1B4_6028 0.87 -1.0
493,435 - Pf1N1B4_6028 0.87 +1.2
493,435 - -1.4
493,435 - Pf1N1B4_6028 0.87 -1.4
493,435 - Pf1N1B4_6028 0.87 -0.4
493,435 - Pf1N1B4_6028 0.87 -0.8
493,436 + Pf1N1B4_6028 0.88 -1.3
493,437 - Pf1N1B4_6028 0.88 -1.5
493,500 + -1.1
493,501 - -1.4
493,501 - -2.0
493,501 - -0.4
493,501 - +0.6
493,600 - -1.4
493,600 - -1.4
493,652 + Pf1N1B4_6029 0.15 -2.1
493,652 + Pf1N1B4_6029 0.15 +0.9
493,653 - -2.4
493,696 - Pf1N1B4_6029 0.19 +1.0
493,709 - Pf1N1B4_6029 0.20 +0.9
493,764 + Pf1N1B4_6029 0.26 -0.4
493,765 - Pf1N1B4_6029 0.26 -2.0
493,765 - Pf1N1B4_6029 0.26 -0.6
493,765 - Pf1N1B4_6029 0.26 -1.2
493,875 + Pf1N1B4_6029 0.37 -0.4
493,876 - Pf1N1B4_6029 0.37 +2.2
494,118 + Pf1N1B4_6029 0.60 +0.3
494,119 - Pf1N1B4_6029 0.60 +0.6
494,119 - Pf1N1B4_6029 0.60 -3.2
494,209 - Pf1N1B4_6029 0.69 -0.2
494,209 - -2.0
494,209 - Pf1N1B4_6029 0.69 -1.4
494,351 - Pf1N1B4_6029 0.83 -1.4
494,517 + +3.7
494,518 - -3.0
494,518 - -0.4
494,563 - -0.0
494,563 - +0.0
494,563 - +1.1
494,571 - +1.6
494,571 - -1.8
494,599 - -1.4
494,792 + Pf1N1B4_6030 0.57 -0.4
494,792 + Pf1N1B4_6030 0.57 -2.4
494,792 + Pf1N1B4_6030 0.57 -1.4
494,792 + Pf1N1B4_6030 0.57 -2.0
494,793 - Pf1N1B4_6030 0.57 -2.4
494,793 - Pf1N1B4_6030 0.57 -1.4
494,806 + Pf1N1B4_6030 0.60 +0.0
494,807 - Pf1N1B4_6030 0.61 -1.4
494,807 - Pf1N1B4_6030 0.61 -1.0
494,974 - -1.3
494,983 + -0.4
494,983 + -1.4
494,983 + +1.2
494,984 - +1.6
494,984 - +0.3
494,984 - +1.4
495,493 + Pf1N1B4_6031 0.58 -1.1
495,494 - Pf1N1B4_6031 0.58 -0.3

Or see this region's nucleotide sequence