Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5428

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5427 and Pf1N1B4_5428 are separated by 474 nucleotidesPf1N1B4_5428 and Pf1N1B4_5429 are separated by 253 nucleotidesPf1N1B4_5429 and Pf1N1B4_5430 are separated by 85 nucleotides Pf1N1B4_5427 - C4-type zinc finger protein, DksA/TraR family, at 166,711 to 167,184 _5427 Pf1N1B4_5428 - hypothetical protein, at 167,659 to 168,645 _5428 Pf1N1B4_5429 - hypothetical protein, at 168,899 to 169,543 _5429 Pf1N1B4_5430 - hypothetical protein, at 169,629 to 169,796 _5430 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.819 kb on + strand, within Pf1N1B4_5427at 166.819 kb on + strand, within Pf1N1B4_5427at 166.820 kb on - strand, within Pf1N1B4_5427at 166.820 kb on - strand, within Pf1N1B4_5427at 166.893 kb on - strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.976 kb on + strand, within Pf1N1B4_5427at 166.977 kb on - strandat 166.986 kb on + strand, within Pf1N1B4_5427at 166.986 kb on + strand, within Pf1N1B4_5427at 166.987 kb on - strand, within Pf1N1B4_5427at 166.987 kb on - strand, within Pf1N1B4_5427at 167.056 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.125 kb on + strand, within Pf1N1B4_5427at 167.126 kb on - strand, within Pf1N1B4_5427at 167.128 kb on - strand, within Pf1N1B4_5427at 167.182 kb on + strandat 167.182 kb on + strandat 167.183 kb on - strandat 167.239 kb on - strandat 167.275 kb on - strandat 167.355 kb on - strandat 167.381 kb on - strandat 167.381 kb on - strandat 167.384 kb on - strandat 167.384 kb on - strandat 167.384 kb on - strandat 167.384 kb on - strandat 167.384 kb on - strandat 167.384 kb on - strandat 167.438 kb on - strandat 167.476 kb on - strandat 167.566 kb on - strandat 167.566 kb on - strandat 167.594 kb on + strandat 167.594 kb on + strandat 167.595 kb on - strandat 167.595 kb on - strandat 167.629 kb on + strandat 167.629 kb on + strandat 167.640 kb on - strandat 167.640 kb on - strandat 167.672 kb on - strandat 167.745 kb on + strandat 167.766 kb on + strand, within Pf1N1B4_5428at 167.788 kb on + strand, within Pf1N1B4_5428at 167.788 kb on + strand, within Pf1N1B4_5428at 167.843 kb on - strand, within Pf1N1B4_5428at 168.034 kb on + strand, within Pf1N1B4_5428at 168.035 kb on - strand, within Pf1N1B4_5428at 168.052 kb on + strand, within Pf1N1B4_5428at 168.053 kb on - strand, within Pf1N1B4_5428at 168.053 kb on - strandat 168.069 kb on + strand, within Pf1N1B4_5428at 168.070 kb on - strand, within Pf1N1B4_5428at 168.130 kb on + strand, within Pf1N1B4_5428at 168.131 kb on - strand, within Pf1N1B4_5428at 168.131 kb on - strand, within Pf1N1B4_5428at 168.131 kb on - strand, within Pf1N1B4_5428at 168.131 kb on - strand, within Pf1N1B4_5428at 168.133 kb on + strand, within Pf1N1B4_5428at 168.133 kb on + strand, within Pf1N1B4_5428at 168.133 kb on + strand, within Pf1N1B4_5428at 168.133 kb on + strand, within Pf1N1B4_5428at 168.133 kb on + strand, within Pf1N1B4_5428at 168.133 kb on + strand, within Pf1N1B4_5428at 168.134 kb on - strand, within Pf1N1B4_5428at 168.134 kb on - strand, within Pf1N1B4_5428at 168.145 kb on + strand, within Pf1N1B4_5428at 168.196 kb on + strand, within Pf1N1B4_5428at 168.197 kb on - strand, within Pf1N1B4_5428at 168.197 kb on - strand, within Pf1N1B4_5428at 168.197 kb on - strand, within Pf1N1B4_5428at 168.197 kb on - strand, within Pf1N1B4_5428at 168.201 kb on - strand, within Pf1N1B4_5428at 168.381 kb on + strand, within Pf1N1B4_5428at 168.391 kb on + strand, within Pf1N1B4_5428at 168.415 kb on + strand, within Pf1N1B4_5428at 168.415 kb on + strand, within Pf1N1B4_5428at 168.416 kb on - strand, within Pf1N1B4_5428at 168.416 kb on - strand, within Pf1N1B4_5428at 168.419 kb on + strand, within Pf1N1B4_5428at 168.419 kb on + strand, within Pf1N1B4_5428at 168.419 kb on + strand, within Pf1N1B4_5428at 168.419 kb on + strand, within Pf1N1B4_5428at 168.419 kb on + strand, within Pf1N1B4_5428at 168.420 kb on - strand, within Pf1N1B4_5428at 168.524 kb on - strand, within Pf1N1B4_5428at 168.524 kb on - strand, within Pf1N1B4_5428at 168.580 kb on + strandat 168.581 kb on - strandat 168.660 kb on - strandat 168.728 kb on + strandat 168.729 kb on - strandat 168.731 kb on + strandat 168.731 kb on + strandat 168.731 kb on + strandat 168.732 kb on - strandat 168.747 kb on + strandat 168.747 kb on + strandat 168.906 kb on - strandat 168.977 kb on + strand, within Pf1N1B4_5429at 168.978 kb on - strand, within Pf1N1B4_5429at 169.103 kb on + strand, within Pf1N1B4_5429at 169.103 kb on + strand, within Pf1N1B4_5429at 169.175 kb on + strand, within Pf1N1B4_5429at 169.175 kb on + strand, within Pf1N1B4_5429at 169.175 kb on + strand, within Pf1N1B4_5429at 169.175 kb on + strand, within Pf1N1B4_5429at 169.175 kb on + strand, within Pf1N1B4_5429at 169.176 kb on - strand, within Pf1N1B4_5429at 169.304 kb on - strand, within Pf1N1B4_5429at 169.304 kb on - strand, within Pf1N1B4_5429at 169.329 kb on + strand, within Pf1N1B4_5429at 169.337 kb on + strand, within Pf1N1B4_5429at 169.337 kb on + strand, within Pf1N1B4_5429at 169.337 kb on + strand, within Pf1N1B4_5429at 169.338 kb on - strand, within Pf1N1B4_5429at 169.549 kb on + strandat 169.549 kb on + strandat 169.549 kb on + strandat 169.549 kb on + strandat 169.549 kb on + strandat 169.584 kb on + strandat 169.584 kb on + strandat 169.584 kb on + strandat 169.585 kb on - strandat 169.585 kb on - strandat 169.631 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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166,819 + Pf1N1B4_5427 0.23 -2.2
166,819 + Pf1N1B4_5427 0.23 +0.2
166,820 - Pf1N1B4_5427 0.23 +1.3
166,820 - Pf1N1B4_5427 0.23 -0.4
166,893 - Pf1N1B4_5427 0.38 -0.1
166,976 + Pf1N1B4_5427 0.56 -1.7
166,976 + Pf1N1B4_5427 0.56 -1.7
166,976 + Pf1N1B4_5427 0.56 -0.5
166,976 + Pf1N1B4_5427 0.56 -1.7
166,976 + Pf1N1B4_5427 0.56 -1.7
166,976 + Pf1N1B4_5427 0.56 +1.3
166,976 + Pf1N1B4_5427 0.56 -1.3
166,976 + Pf1N1B4_5427 0.56 -0.1
166,976 + Pf1N1B4_5427 0.56 -2.4
166,977 - +2.2
166,986 + Pf1N1B4_5427 0.58 +0.3
166,986 + Pf1N1B4_5427 0.58 +0.7
166,987 - Pf1N1B4_5427 0.58 -1.7
166,987 - Pf1N1B4_5427 0.58 +0.2
167,056 + Pf1N1B4_5427 0.73 -0.8
167,125 + Pf1N1B4_5427 0.87 +0.6
167,125 + Pf1N1B4_5427 0.87 -1.4
167,125 + Pf1N1B4_5427 0.87 -1.4
167,125 + Pf1N1B4_5427 0.87 +0.5
167,125 + Pf1N1B4_5427 0.87 +0.9
167,125 + Pf1N1B4_5427 0.87 -2.1
167,125 + Pf1N1B4_5427 0.87 -0.5
167,126 - Pf1N1B4_5427 0.88 +1.3
167,128 - Pf1N1B4_5427 0.88 +0.5
167,182 + -0.1
167,182 + -1.1
167,183 - -0.2
167,239 - +0.5
167,275 - -3.2
167,355 - -2.7
167,381 - -2.4
167,381 - +2.2
167,384 - +2.2
167,384 - +0.2
167,384 - -1.0
167,384 - -0.8
167,384 - -3.1
167,384 - -1.7
167,438 - -1.1
167,476 - -1.1
167,566 - +1.2
167,566 - +1.5
167,594 + -1.7
167,594 + -1.7
167,595 - +1.8
167,595 - -0.1
167,629 + +0.2
167,629 + +1.1
167,640 - -0.1
167,640 - -0.1
167,672 - +1.3
167,745 + +0.5
167,766 + Pf1N1B4_5428 0.11 -0.1
167,788 + Pf1N1B4_5428 0.13 -1.4
167,788 + Pf1N1B4_5428 0.13 -0.7
167,843 - Pf1N1B4_5428 0.19 +0.4
168,034 + Pf1N1B4_5428 0.38 +1.4
168,035 - Pf1N1B4_5428 0.38 +0.9
168,052 + Pf1N1B4_5428 0.40 +0.9
168,053 - Pf1N1B4_5428 0.40 +0.9
168,053 - -0.1
168,069 + Pf1N1B4_5428 0.42 +1.5
168,070 - Pf1N1B4_5428 0.42 -1.7
168,130 + Pf1N1B4_5428 0.48 +0.2
168,131 - Pf1N1B4_5428 0.48 -1.7
168,131 - Pf1N1B4_5428 0.48 +0.8
168,131 - Pf1N1B4_5428 0.48 -0.1
168,131 - Pf1N1B4_5428 0.48 +1.2
168,133 + Pf1N1B4_5428 0.48 -2.4
168,133 + Pf1N1B4_5428 0.48 +0.2
168,133 + Pf1N1B4_5428 0.48 -0.1
168,133 + Pf1N1B4_5428 0.48 +1.9
168,133 + Pf1N1B4_5428 0.48 -0.5
168,133 + Pf1N1B4_5428 0.48 -2.4
168,134 - Pf1N1B4_5428 0.48 -0.1
168,134 - Pf1N1B4_5428 0.48 +1.5
168,145 + Pf1N1B4_5428 0.49 -0.1
168,196 + Pf1N1B4_5428 0.54 -1.4
168,197 - Pf1N1B4_5428 0.55 +1.9
168,197 - Pf1N1B4_5428 0.55 +2.4
168,197 - Pf1N1B4_5428 0.55 -0.6
168,197 - Pf1N1B4_5428 0.55 -2.1
168,201 - Pf1N1B4_5428 0.55 +2.4
168,381 + Pf1N1B4_5428 0.73 -0.4
168,391 + Pf1N1B4_5428 0.74 -3.1
168,415 + Pf1N1B4_5428 0.77 -0.1
168,415 + Pf1N1B4_5428 0.77 -0.5
168,416 - Pf1N1B4_5428 0.77 -0.1
168,416 - Pf1N1B4_5428 0.77 -1.1
168,419 + Pf1N1B4_5428 0.77 -0.3
168,419 + Pf1N1B4_5428 0.77 +1.7
168,419 + Pf1N1B4_5428 0.77 -1.1
168,419 + Pf1N1B4_5428 0.77 +0.2
168,419 + Pf1N1B4_5428 0.77 +0.3
168,420 - Pf1N1B4_5428 0.77 -0.1
168,524 - Pf1N1B4_5428 0.88 -1.7
168,524 - Pf1N1B4_5428 0.88 +1.2
168,580 + -2.7
168,581 - +0.4
168,660 - -1.1
168,728 + -2.1
168,729 - -0.1
168,731 + -0.8
168,731 + +1.4
168,731 + -0.7
168,732 - +1.5
168,747 + -0.1
168,747 + -1.1
168,906 - -0.1
168,977 + Pf1N1B4_5429 0.12 +0.7
168,978 - Pf1N1B4_5429 0.12 +1.7
169,103 + Pf1N1B4_5429 0.32 -0.5
169,103 + Pf1N1B4_5429 0.32 -2.1
169,175 + Pf1N1B4_5429 0.43 -0.7
169,175 + Pf1N1B4_5429 0.43 -1.1
169,175 + Pf1N1B4_5429 0.43 -1.1
169,175 + Pf1N1B4_5429 0.43 -0.1
169,175 + Pf1N1B4_5429 0.43 -1.7
169,176 - Pf1N1B4_5429 0.43 +1.5
169,304 - Pf1N1B4_5429 0.63 -2.4
169,304 - Pf1N1B4_5429 0.63 -0.8
169,329 + Pf1N1B4_5429 0.67 -0.4
169,337 + Pf1N1B4_5429 0.68 -0.1
169,337 + Pf1N1B4_5429 0.68 +0.9
169,337 + Pf1N1B4_5429 0.68 +1.7
169,338 - Pf1N1B4_5429 0.68 +0.2
169,549 + -0.3
169,549 + +1.2
169,549 + -0.5
169,549 + -0.5
169,549 + -0.1
169,584 + +0.3
169,584 + +2.7
169,584 + -2.2
169,585 - +0.3
169,585 - +0.5
169,631 - -2.4

Or see this region's nucleotide sequence