Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_5289

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_5289 and Pf1N1B4_5290 are separated by 351 nucleotidesPf1N1B4_5290 and Pf1N1B4_5291 are separated by 290 nucleotides Pf1N1B4_5289 - hypothetical protein, at 43,736 to 44,062 _5289 Pf1N1B4_5290 - hypothetical protein, at 44,414 to 44,644 _5290 Pf1N1B4_5291 - Putative reductase, at 44,935 to 46,248 _5291 Position (kb) 43 44 45Strain fitness (log2 ratio) -3 -2 -1 0 1at 42.747 kb on + strandat 42.748 kb on - strandat 42.784 kb on + strandat 42.814 kb on + strandat 42.849 kb on + strandat 42.940 kb on + strandat 42.940 kb on + strandat 43.041 kb on - strandat 43.042 kb on + strandat 43.042 kb on + strandat 43.042 kb on + strandat 43.042 kb on + strandat 43.042 kb on + strandat 43.042 kb on + strandat 43.043 kb on - strandat 43.043 kb on - strandat 43.043 kb on - strandat 43.043 kb on - strandat 43.099 kb on - strandat 43.099 kb on - strandat 43.104 kb on - strandat 43.155 kb on - strandat 43.332 kb on - strandat 43.413 kb on + strandat 43.413 kb on + strandat 43.510 kb on + strandat 43.606 kb on + strandat 43.765 kb on + strandat 43.765 kb on + strandat 43.765 kb on + strandat 43.765 kb on + strandat 43.765 kb on + strandat 43.766 kb on - strandat 43.766 kb on - strandat 43.766 kb on - strandat 43.766 kb on - strandat 43.766 kb on - strandat 43.766 kb on - strandat 43.920 kb on - strand, within Pf1N1B4_5289at 43.920 kb on - strand, within Pf1N1B4_5289at 43.944 kb on + strand, within Pf1N1B4_5289at 43.945 kb on - strand, within Pf1N1B4_5289at 43.945 kb on - strand, within Pf1N1B4_5289at 43.967 kb on - strand, within Pf1N1B4_5289at 43.967 kb on - strand, within Pf1N1B4_5289at 44.127 kb on - strandat 44.255 kb on + strandat 44.256 kb on - strandat 44.256 kb on - strandat 44.256 kb on - strandat 44.275 kb on + strandat 44.415 kb on + strandat 44.650 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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42,747 + -1.9
42,748 - -0.1
42,784 + -2.4
42,814 + -0.5
42,849 + -0.1
42,940 + +0.9
42,940 + -0.7
43,041 - +0.3
43,042 + +0.9
43,042 + -1.7
43,042 + -2.1
43,042 + -2.1
43,042 + +1.3
43,042 + -1.7
43,043 - -1.4
43,043 - +0.2
43,043 - -0.1
43,043 - -0.1
43,099 - +0.9
43,099 - -1.7
43,104 - -0.4
43,155 - -1.1
43,332 - -0.1
43,413 + -0.1
43,413 + -1.7
43,510 + -2.9
43,606 + +0.2
43,765 + -0.1
43,765 + +1.5
43,765 + -0.1
43,765 + -1.1
43,765 + -1.7
43,766 - -0.5
43,766 - +0.9
43,766 - -2.4
43,766 - -0.1
43,766 - -0.1
43,766 - -0.3
43,920 - Pf1N1B4_5289 0.56 +0.3
43,920 - Pf1N1B4_5289 0.56 -1.1
43,944 + Pf1N1B4_5289 0.64 -1.1
43,945 - Pf1N1B4_5289 0.64 -3.1
43,945 - Pf1N1B4_5289 0.64 -1.7
43,967 - Pf1N1B4_5289 0.71 -1.4
43,967 - Pf1N1B4_5289 0.71 -1.7
44,127 - +0.5
44,255 + +0.3
44,256 - -1.7
44,256 - +0.3
44,256 - +0.7
44,275 + -1.7
44,415 + -2.1
44,650 - -2.4

Or see this region's nucleotide sequence