Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_4907 and Pf1N1B4_4908 are separated by 283 nucleotides Pf1N1B4_4908 and Pf1N1B4_4909 are separated by 152 nucleotides Pf1N1B4_4909 and Pf1N1B4_4910 are separated by 236 nucleotides
Pf1N1B4_4907 - Lipase (EC 3.1.1.3), at 5,436,197 to 5,438,050
_4907
Pf1N1B4_4908 - hypothetical protein, at 5,438,334 to 5,438,708
_4908
Pf1N1B4_4909 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 5,438,861 to 5,439,823
_4909
Pf1N1B4_4910 - Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19), at 5,440,060 to 5,441,352
_4910
Position (kb)
5438
5439
5440 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 5437.963 kb on + strand at 5437.963 kb on + strand at 5437.964 kb on - strand at 5438.197 kb on + strand at 5438.197 kb on + strand at 5438.198 kb on - strand at 5438.230 kb on - strand at 5438.230 kb on - strand at 5438.317 kb on - strand at 5438.340 kb on - strand at 5438.352 kb on + strand at 5438.353 kb on - strand at 5438.690 kb on + strand at 5438.690 kb on + strand at 5438.691 kb on - strand at 5438.691 kb on - strand at 5438.691 kb on - strand at 5438.691 kb on - strand at 5438.712 kb on + strand at 5438.713 kb on - strand at 5438.727 kb on - strand at 5438.937 kb on - strand at 5438.937 kb on - strand at 5439.495 kb on + strand, within Pf1N1B4_4909 at 5439.663 kb on + strand at 5439.772 kb on + strand at 5439.773 kb on - strand at 5439.775 kb on - strand at 5439.876 kb on + strand at 5439.982 kb on + strand at 5440.319 kb on - strand, within Pf1N1B4_4910 at 5440.327 kb on + strand, within Pf1N1B4_4910 at 5440.380 kb on + strand, within Pf1N1B4_4910 at 5440.534 kb on + strand, within Pf1N1B4_4910 at 5440.534 kb on + strand, within Pf1N1B4_4910 at 5440.536 kb on + strand, within Pf1N1B4_4910 at 5440.536 kb on + strand, within Pf1N1B4_4910 at 5440.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 5,437,963 + -0.4 5,437,963 + +1.1 5,437,964 - -0.8 5,438,197 + +0.2 5,438,197 + -0.8 5,438,198 - -1.4 5,438,230 - +1.0 5,438,230 - +0.6 5,438,317 - +0.8 5,438,340 - -3.1 5,438,352 + +0.4 5,438,353 - +0.6 5,438,690 + -1.2 5,438,690 + -0.9 5,438,691 - -0.2 5,438,691 - -0.2 5,438,691 - -3.4 5,438,691 - -0.6 5,438,712 + -0.4 5,438,713 - -0.0 5,438,727 - -3.1 5,438,937 - +1.2 5,438,937 - +1.8 5,439,495 + Pf1N1B4_4909 0.66 -1.1 5,439,663 + -0.8 5,439,772 + -1.8 5,439,773 - -0.6 5,439,775 - -2.8 5,439,876 + +0.2 5,439,982 + -1.8 5,440,319 - Pf1N1B4_4910 0.20 +0.8 5,440,327 + Pf1N1B4_4910 0.21 +0.5 5,440,380 + Pf1N1B4_4910 0.25 -0.8 5,440,534 + Pf1N1B4_4910 0.37 +0.6 5,440,534 + Pf1N1B4_4910 0.37 -1.2 5,440,536 + Pf1N1B4_4910 0.37 -0.1 5,440,536 + Pf1N1B4_4910 0.37 +0.8 5,440,537 - -2.4
Or see this region's nucleotide sequence