Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4247

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4246 and Pf1N1B4_4247 are separated by 527 nucleotidesPf1N1B4_4247 and Pf1N1B4_4248 are separated by 161 nucleotides Pf1N1B4_4246 - L-lactate permease, at 4,706,537 to 4,708,294 _4246 Pf1N1B4_4247 - D-aminopeptidase (EC 3.4.11.19), at 4,708,822 to 4,709,937 _4247 Pf1N1B4_4248 - Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2), at 4,710,099 to 4,711,202 _4248 Position (kb) 4708 4709 4710Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4708.250 kb on + strandat 4708.250 kb on + strandat 4708.311 kb on + strandat 4708.355 kb on + strandat 4708.355 kb on + strandat 4708.357 kb on + strandat 4708.358 kb on - strandat 4708.577 kb on + strandat 4708.578 kb on - strandat 4708.629 kb on + strandat 4708.630 kb on - strandat 4708.674 kb on + strandat 4708.674 kb on + strandat 4708.744 kb on + strandat 4708.775 kb on + strandat 4708.775 kb on + strandat 4708.775 kb on + strandat 4708.787 kb on - strandat 4708.812 kb on + strandat 4708.812 kb on + strandat 4708.813 kb on - strandat 4708.818 kb on + strandat 4708.823 kb on + strandat 4709.500 kb on + strand, within Pf1N1B4_4247at 4709.500 kb on + strand, within Pf1N1B4_4247at 4709.500 kb on + strand, within Pf1N1B4_4247at 4709.501 kb on - strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.798 kb on + strand, within Pf1N1B4_4247at 4709.799 kb on - strand, within Pf1N1B4_4247at 4709.799 kb on - strand, within Pf1N1B4_4247at 4709.986 kb on + strandat 4710.094 kb on + strandat 4710.320 kb on - strand, within Pf1N1B4_4248at 4710.544 kb on + strand, within Pf1N1B4_4248at 4710.593 kb on - strandat 4710.823 kb on + strand, within Pf1N1B4_4248

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,708,250 + -2.5
4,708,250 + -0.2
4,708,311 + +1.1
4,708,355 + -2.1
4,708,355 + +0.0
4,708,357 + -0.4
4,708,358 - -0.2
4,708,577 + +2.5
4,708,578 - +0.2
4,708,629 + +0.5
4,708,630 - -0.2
4,708,674 + -1.5
4,708,674 + +1.7
4,708,744 + +2.7
4,708,775 + -2.5
4,708,775 + +0.9
4,708,775 + +0.2
4,708,787 - -1.1
4,708,812 + +0.4
4,708,812 + -1.5
4,708,813 - -1.5
4,708,818 + +0.8
4,708,823 + -1.1
4,709,500 + Pf1N1B4_4247 0.61 -1.2
4,709,500 + Pf1N1B4_4247 0.61 -2.8
4,709,500 + Pf1N1B4_4247 0.61 +1.1
4,709,501 - Pf1N1B4_4247 0.61 -3.3
4,709,798 + Pf1N1B4_4247 0.87 -1.5
4,709,798 + Pf1N1B4_4247 0.87 -4.2
4,709,798 + Pf1N1B4_4247 0.87 -1.5
4,709,798 + Pf1N1B4_4247 0.87 -2.1
4,709,799 - Pf1N1B4_4247 0.88 -1.3
4,709,799 - Pf1N1B4_4247 0.88 -1.5
4,709,986 + -1.5
4,710,094 + -0.1
4,710,320 - Pf1N1B4_4248 0.20 +0.1
4,710,544 + Pf1N1B4_4248 0.40 -0.5
4,710,593 - -0.5
4,710,823 + Pf1N1B4_4248 0.66 -0.1

Or see this region's nucleotide sequence