Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_4187

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_4186 and Pf1N1B4_4187 are separated by 315 nucleotidesPf1N1B4_4187 and Pf1N1B4_4188 are separated by 59 nucleotides Pf1N1B4_4186 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 4,634,697 to 4,636,028 _4186 Pf1N1B4_4187 - Probable signal peptide protein, at 4,636,344 to 4,636,913 _4187 Pf1N1B4_4188 - acetyltransferase, GNAT family, at 4,636,973 to 4,637,683 _4188 Position (kb) 4636 4637Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4635.372 kb on + strand, within Pf1N1B4_4186at 4635.487 kb on - strand, within Pf1N1B4_4186at 4635.549 kb on + strand, within Pf1N1B4_4186at 4635.549 kb on + strand, within Pf1N1B4_4186at 4635.550 kb on - strand, within Pf1N1B4_4186at 4635.550 kb on - strand, within Pf1N1B4_4186at 4635.553 kb on + strand, within Pf1N1B4_4186at 4635.553 kb on + strand, within Pf1N1B4_4186at 4635.778 kb on + strand, within Pf1N1B4_4186at 4636.030 kb on - strandat 4636.224 kb on + strandat 4636.266 kb on - strandat 4636.273 kb on + strandat 4636.426 kb on - strand, within Pf1N1B4_4187at 4636.467 kb on + strand, within Pf1N1B4_4187at 4636.468 kb on - strand, within Pf1N1B4_4187at 4636.468 kb on - strand, within Pf1N1B4_4187at 4636.468 kb on - strandat 4636.468 kb on - strand, within Pf1N1B4_4187at 4636.468 kb on - strand, within Pf1N1B4_4187at 4636.762 kb on + strand, within Pf1N1B4_4187at 4636.762 kb on + strand, within Pf1N1B4_4187at 4636.762 kb on + strand, within Pf1N1B4_4187at 4636.762 kb on + strand, within Pf1N1B4_4187at 4636.763 kb on - strand, within Pf1N1B4_4187at 4636.763 kb on - strandat 4636.763 kb on - strand, within Pf1N1B4_4187at 4636.964 kb on + strandat 4637.052 kb on + strand, within Pf1N1B4_4188at 4637.096 kb on + strand, within Pf1N1B4_4188at 4637.096 kb on + strand, within Pf1N1B4_4188at 4637.096 kb on + strand, within Pf1N1B4_4188at 4637.096 kb on + strand, within Pf1N1B4_4188at 4637.096 kb on + strand, within Pf1N1B4_4188at 4637.097 kb on - strand, within Pf1N1B4_4188at 4637.105 kb on + strand, within Pf1N1B4_4188at 4637.105 kb on + strand, within Pf1N1B4_4188at 4637.106 kb on - strand, within Pf1N1B4_4188at 4637.123 kb on + strand, within Pf1N1B4_4188at 4637.138 kb on + strand, within Pf1N1B4_4188at 4637.138 kb on + strand, within Pf1N1B4_4188at 4637.234 kb on + strand, within Pf1N1B4_4188at 4637.234 kb on + strand, within Pf1N1B4_4188at 4637.234 kb on + strand, within Pf1N1B4_4188at 4637.276 kb on + strand, within Pf1N1B4_4188at 4637.276 kb on + strand, within Pf1N1B4_4188at 4637.276 kb on + strand, within Pf1N1B4_4188at 4637.348 kb on + strandat 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.500 kb on + strand, within Pf1N1B4_4188at 4637.501 kb on - strand, within Pf1N1B4_4188at 4637.504 kb on + strand, within Pf1N1B4_4188at 4637.504 kb on + strand, within Pf1N1B4_4188at 4637.504 kb on + strand, within Pf1N1B4_4188at 4637.504 kb on + strandat 4637.504 kb on + strand, within Pf1N1B4_4188at 4637.505 kb on - strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.529 kb on + strand, within Pf1N1B4_4188at 4637.530 kb on - strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strandat 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strandat 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.533 kb on + strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strandat 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strandat 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strandat 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.534 kb on - strand, within Pf1N1B4_4188at 4637.537 kb on + strand, within Pf1N1B4_4188at 4637.537 kb on + strand, within Pf1N1B4_4188at 4637.537 kb on + strand, within Pf1N1B4_4188at 4637.681 kb on + strandat 4637.681 kb on + strandat 4637.739 kb on + strandat 4637.739 kb on + strandat 4637.754 kb on + strandat 4637.765 kb on + strandat 4637.804 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.846 kb on + strandat 4637.847 kb on - strandat 4637.847 kb on - strandat 4637.847 kb on - strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.848 kb on + strandat 4637.849 kb on - strandat 4637.849 kb on - strandat 4637.902 kb on + strandat 4637.902 kb on + strandat 4637.902 kb on + strandat 4637.902 kb on + strandat 4637.903 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,635,372 + Pf1N1B4_4186 0.51 +1.1
4,635,487 - Pf1N1B4_4186 0.59 +0.7
4,635,549 + Pf1N1B4_4186 0.64 +0.7
4,635,549 + Pf1N1B4_4186 0.64 +0.7
4,635,550 - Pf1N1B4_4186 0.64 +0.5
4,635,550 - Pf1N1B4_4186 0.64 -2.8
4,635,553 + Pf1N1B4_4186 0.64 -1.3
4,635,553 + Pf1N1B4_4186 0.64 +1.7
4,635,778 + Pf1N1B4_4186 0.81 +1.1
4,636,030 - -1.7
4,636,224 + -2.5
4,636,266 - -0.7
4,636,273 + +1.1
4,636,426 - Pf1N1B4_4187 0.14 -0.5
4,636,467 + Pf1N1B4_4187 0.22 +0.5
4,636,468 - Pf1N1B4_4187 0.22 -1.5
4,636,468 - Pf1N1B4_4187 0.22 +0.5
4,636,468 - -0.5
4,636,468 - Pf1N1B4_4187 0.22 -2.5
4,636,468 - Pf1N1B4_4187 0.22 -0.5
4,636,762 + Pf1N1B4_4187 0.73 -2.8
4,636,762 + Pf1N1B4_4187 0.73 -2.1
4,636,762 + Pf1N1B4_4187 0.73 -0.9
4,636,762 + Pf1N1B4_4187 0.73 -0.5
4,636,763 - Pf1N1B4_4187 0.74 -1.5
4,636,763 - -2.1
4,636,763 - Pf1N1B4_4187 0.74 -1.2
4,636,964 + +0.4
4,637,052 + Pf1N1B4_4188 0.11 -0.5
4,637,096 + Pf1N1B4_4188 0.17 -2.5
4,637,096 + Pf1N1B4_4188 0.17 -1.5
4,637,096 + Pf1N1B4_4188 0.17 -1.5
4,637,096 + Pf1N1B4_4188 0.17 +0.4
4,637,096 + Pf1N1B4_4188 0.17 -0.2
4,637,097 - Pf1N1B4_4188 0.17 -2.1
4,637,105 + Pf1N1B4_4188 0.19 -0.8
4,637,105 + Pf1N1B4_4188 0.19 -1.5
4,637,106 - Pf1N1B4_4188 0.19 +0.2
4,637,123 + Pf1N1B4_4188 0.21 -0.2
4,637,138 + Pf1N1B4_4188 0.23 -0.5
4,637,138 + Pf1N1B4_4188 0.23 +1.8
4,637,234 + Pf1N1B4_4188 0.37 +2.1
4,637,234 + Pf1N1B4_4188 0.37 -1.5
4,637,234 + Pf1N1B4_4188 0.37 +0.3
4,637,276 + Pf1N1B4_4188 0.43 +0.7
4,637,276 + Pf1N1B4_4188 0.43 -1.5
4,637,276 + Pf1N1B4_4188 0.43 +0.1
4,637,348 + -1.5
4,637,500 + Pf1N1B4_4188 0.74 -0.9
4,637,500 + Pf1N1B4_4188 0.74 -1.5
4,637,500 + Pf1N1B4_4188 0.74 +0.5
4,637,500 + Pf1N1B4_4188 0.74 -1.4
4,637,500 + Pf1N1B4_4188 0.74 -0.0
4,637,500 + Pf1N1B4_4188 0.74 +0.8
4,637,500 + Pf1N1B4_4188 0.74 -0.5
4,637,501 - Pf1N1B4_4188 0.74 +0.1
4,637,504 + Pf1N1B4_4188 0.75 +1.4
4,637,504 + Pf1N1B4_4188 0.75 +0.5
4,637,504 + Pf1N1B4_4188 0.75 +0.5
4,637,504 + +0.5
4,637,504 + Pf1N1B4_4188 0.75 -1.5
4,637,505 - Pf1N1B4_4188 0.75 +0.8
4,637,529 + Pf1N1B4_4188 0.78 +0.3
4,637,529 + Pf1N1B4_4188 0.78 -0.4
4,637,529 + Pf1N1B4_4188 0.78 +1.1
4,637,529 + Pf1N1B4_4188 0.78 -1.3
4,637,529 + Pf1N1B4_4188 0.78 -3.1
4,637,529 + Pf1N1B4_4188 0.78 -2.8
4,637,529 + Pf1N1B4_4188 0.78 +0.2
4,637,529 + Pf1N1B4_4188 0.78 -1.5
4,637,529 + Pf1N1B4_4188 0.78 +1.5
4,637,530 - Pf1N1B4_4188 0.78 -1.5
4,637,533 + Pf1N1B4_4188 0.79 -1.5
4,637,533 + -2.1
4,637,533 + Pf1N1B4_4188 0.79 -3.8
4,637,533 + Pf1N1B4_4188 0.79 +1.0
4,637,533 + Pf1N1B4_4188 0.79 +0.2
4,637,533 + Pf1N1B4_4188 0.79 +1.1
4,637,533 + Pf1N1B4_4188 0.79 -0.5
4,637,533 + Pf1N1B4_4188 0.79 -0.2
4,637,533 + Pf1N1B4_4188 0.79 +0.8
4,637,533 + Pf1N1B4_4188 0.79 -0.5
4,637,533 + -0.5
4,637,533 + Pf1N1B4_4188 0.79 +0.5
4,637,533 + Pf1N1B4_4188 0.79 -3.0
4,637,533 + Pf1N1B4_4188 0.79 -1.7
4,637,533 + Pf1N1B4_4188 0.79 -3.1
4,637,533 + Pf1N1B4_4188 0.79 +1.3
4,637,533 + Pf1N1B4_4188 0.79 -1.5
4,637,533 + Pf1N1B4_4188 0.79 -1.0
4,637,533 + Pf1N1B4_4188 0.79 -1.5
4,637,533 + Pf1N1B4_4188 0.79 +0.7
4,637,533 + Pf1N1B4_4188 0.79 -1.8
4,637,533 + Pf1N1B4_4188 0.79 +0.5
4,637,533 + Pf1N1B4_4188 0.79 -1.5
4,637,533 + Pf1N1B4_4188 0.79 +2.5
4,637,533 + Pf1N1B4_4188 0.79 +0.5
4,637,533 + Pf1N1B4_4188 0.79 -0.5
4,637,533 + Pf1N1B4_4188 0.79 -2.5
4,637,533 + Pf1N1B4_4188 0.79 -0.8
4,637,533 + Pf1N1B4_4188 0.79 -2.1
4,637,533 + Pf1N1B4_4188 0.79 +0.2
4,637,533 + Pf1N1B4_4188 0.79 -3.5
4,637,533 + Pf1N1B4_4188 0.79 +0.1
4,637,533 + Pf1N1B4_4188 0.79 +0.5
4,637,533 + Pf1N1B4_4188 0.79 +0.7
4,637,533 + Pf1N1B4_4188 0.79 -1.5
4,637,533 + Pf1N1B4_4188 0.79 -2.5
4,637,533 + Pf1N1B4_4188 0.79 -1.5
4,637,533 + Pf1N1B4_4188 0.79 -2.5
4,637,533 + Pf1N1B4_4188 0.79 -2.8
4,637,533 + Pf1N1B4_4188 0.79 -2.5
4,637,534 - Pf1N1B4_4188 0.79 +0.7
4,637,534 - Pf1N1B4_4188 0.79 -0.1
4,637,534 - Pf1N1B4_4188 0.79 +0.5
4,637,534 - Pf1N1B4_4188 0.79 -2.1
4,637,534 - +0.5
4,637,534 - Pf1N1B4_4188 0.79 +1.7
4,637,534 - Pf1N1B4_4188 0.79 -2.5
4,637,534 - Pf1N1B4_4188 0.79 -1.5
4,637,534 - -0.5
4,637,534 - Pf1N1B4_4188 0.79 +0.5
4,637,534 - Pf1N1B4_4188 0.79 +1.3
4,637,534 - +0.8
4,637,534 - Pf1N1B4_4188 0.79 +0.7
4,637,534 - Pf1N1B4_4188 0.79 -0.5
4,637,537 + Pf1N1B4_4188 0.79 -1.5
4,637,537 + Pf1N1B4_4188 0.79 -0.5
4,637,537 + Pf1N1B4_4188 0.79 -1.5
4,637,681 + -1.5
4,637,681 + -0.1
4,637,739 + -3.1
4,637,739 + +0.5
4,637,754 + -2.3
4,637,765 + -2.8
4,637,804 + +2.1
4,637,846 + -1.5
4,637,846 + -0.5
4,637,846 + -0.5
4,637,846 + +1.1
4,637,846 + +1.1
4,637,846 + -2.1
4,637,846 + -1.1
4,637,846 + -0.5
4,637,846 + -1.1
4,637,847 - +0.1
4,637,847 - -0.8
4,637,847 - -1.3
4,637,848 + -0.5
4,637,848 + -0.5
4,637,848 + -1.5
4,637,848 + -1.1
4,637,848 + -0.5
4,637,848 + -2.5
4,637,848 + +0.5
4,637,848 + -1.5
4,637,848 + -0.5
4,637,849 - +0.5
4,637,849 - +0.2
4,637,902 + +0.7
4,637,902 + -0.1
4,637,902 + +0.5
4,637,902 + -2.5
4,637,903 - +0.7

Or see this region's nucleotide sequence